View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_49 (Length: 363)

Name: NF6973_low_49
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_49
NF6973_low_49
[»] chr8 (23 HSPs)
chr8 (168-349)||(16787012-16787191)
chr8 (175-349)||(34135802-34135971)
chr8 (175-349)||(4405009-4405182)
chr8 (265-349)||(23403069-23403153)
chr8 (265-344)||(15839283-15839362)
chr8 (262-349)||(29727463-29727550)
chr8 (262-349)||(36409486-36409572)
chr8 (262-349)||(40469946-40470033)
chr8 (265-341)||(42231915-42231991)
chr8 (268-332)||(3647876-3647940)
chr8 (262-349)||(7279027-7279115)
chr8 (262-321)||(27046841-27046900)
chr8 (265-349)||(3436235-3436319)
chr8 (265-349)||(24019472-24019556)
chr8 (265-349)||(28524200-28524284)
chr8 (265-349)||(39915516-39915600)
chr8 (265-324)||(29632413-29632472)
chr8 (262-312)||(21958692-21958742)
chr8 (262-312)||(32342996-32343046)
chr8 (262-312)||(32355483-32355533)
chr8 (262-312)||(32359602-32359652)
chr8 (262-312)||(32372133-32372183)
chr8 (292-341)||(2727959-2728008)
[»] chr4 (41 HSPs)
chr4 (168-349)||(43142575-43142751)
chr4 (175-349)||(3291889-3292063)
chr4 (168-349)||(7769557-7769736)
chr4 (168-349)||(35546952-35547134)
chr4 (264-349)||(33135525-33135610)
chr4 (262-343)||(44157631-44157712)
chr4 (262-349)||(30076730-30076817)
chr4 (262-349)||(30215825-30215912)
chr4 (262-349)||(42332852-42332939)
chr4 (263-349)||(28876394-28876480)
chr4 (265-349)||(50204169-50204253)
chr4 (264-347)||(6689318-6689401)
chr4 (262-349)||(13390526-13390613)
chr4 (262-349)||(13398639-13398726)
chr4 (262-344)||(10351975-10352057)
chr4 (262-344)||(37577756-37577838)
chr4 (262-349)||(1818657-1818743)
chr4 (262-349)||(36381428-36381515)
chr4 (262-349)||(40530086-40530173)
chr4 (263-349)||(17510319-17510405)
chr4 (262-332)||(29319432-29319502)
chr4 (262-341)||(26449702-26449781)
chr4 (265-344)||(25931760-25931839)
chr4 (264-349)||(29995089-29995168)
chr4 (265-349)||(13013190-13013274)
chr4 (265-349)||(47501775-47501859)
chr4 (262-324)||(6236485-6236547)
chr4 (265-330)||(20130249-20130314)
chr4 (265-349)||(26438360-26438444)
chr4 (265-349)||(30110962-30111046)
chr4 (265-349)||(34406365-34406449)
chr4 (265-349)||(43356906-43356990)
chr4 (262-344)||(48131018-48131099)
chr4 (277-341)||(48990280-48990344)
chr4 (262-310)||(42843892-42843940)
chr4 (265-312)||(8897874-8897921)
chr4 (168-217)||(6689228-6689277)
chr4 (168-230)||(42332765-42332827)
chr4 (262-312)||(55464605-55464655)
chr4 (262-310)||(21753574-21753622)
chr4 (264-312)||(25182827-25182874)
[»] chr5 (22 HSPs)
chr5 (170-349)||(12277844-12278021)
chr5 (168-349)||(17330982-17331162)
chr5 (175-349)||(31681367-31681542)
chr5 (175-349)||(33431321-33431496)
chr5 (262-349)||(37255633-37255720)
chr5 (262-349)||(10036908-10036995)
chr5 (262-349)||(19986445-19986532)
chr5 (265-349)||(43069847-43069931)
chr5 (262-349)||(13818978-13819065)
chr5 (262-349)||(16155892-16155979)
chr5 (262-349)||(16332979-16333066)
chr5 (262-349)||(39656606-39656693)
chr5 (265-349)||(39435701-39435785)
chr5 (264-349)||(28801876-28801961)
chr5 (262-349)||(36292356-36292444)
chr5 (262-349)||(1775457-1775544)
chr5 (265-344)||(36292702-36292781)
chr5 (265-349)||(26282399-26282483)
chr5 (262-349)||(31500799-31500883)
chr5 (262-312)||(1280761-1280811)
chr5 (262-312)||(3055662-3055712)
chr5 (264-312)||(22542066-22542114)
[»] chr7 (22 HSPs)
chr7 (191-349)||(26625745-26625903)
chr7 (191-349)||(38637390-38637548)
chr7 (169-349)||(37001227-37001405)
chr7 (169-349)||(8866719-8866897)
chr7 (175-349)||(43183460-43183635)
chr7 (262-349)||(7003627-7003714)
chr7 (262-349)||(7049498-7049585)
chr7 (264-349)||(34468415-34468500)
chr7 (262-349)||(3113201-3113288)
chr7 (262-349)||(5556463-5556550)
chr7 (262-349)||(36631817-36631904)
chr7 (264-349)||(8395125-8395210)
chr7 (265-349)||(14775677-14775761)
chr7 (265-349)||(15226130-15226214)
chr7 (265-321)||(36659189-36659245)
chr7 (263-329)||(33686553-33686619)
chr7 (288-332)||(11019694-11019738)
chr7 (262-312)||(38575233-38575284)
chr7 (262-312)||(10224071-10224121)
chr7 (262-312)||(27387251-27387301)
chr7 (262-312)||(45197823-45197873)
chr7 (264-312)||(13715134-13715182)
[»] chr6 (8 HSPs)
chr6 (164-349)||(28997730-28997915)
chr6 (262-349)||(29744271-29744358)
chr6 (262-349)||(33228430-33228517)
chr6 (262-349)||(34947905-34947992)
chr6 (265-349)||(13838800-13838884)
chr6 (262-349)||(31028033-31028120)
chr6 (265-349)||(399619-399703)
chr6 (294-349)||(34253131-34253186)
[»] chr1 (15 HSPs)
chr1 (182-349)||(35908557-35908722)
chr1 (262-349)||(11957437-11957524)
chr1 (265-349)||(17446294-17446378)
chr1 (262-349)||(15209367-15209454)
chr1 (262-349)||(23313995-23314082)
chr1 (264-353)||(32981139-32981228)
chr1 (262-349)||(7434423-7434510)
chr1 (264-344)||(42310019-42310099)
chr1 (262-341)||(3829961-3830040)
chr1 (289-349)||(33490381-33490441)
chr1 (265-349)||(41971337-41971421)
chr1 (265-312)||(30558953-30559000)
chr1 (262-312)||(17874958-17875008)
chr1 (262-312)||(26272874-26272924)
chr1 (262-312)||(41753132-41753182)
[»] chr2 (25 HSPs)
chr2 (164-349)||(45419583-45419769)
chr2 (264-349)||(8058424-8058509)
chr2 (262-349)||(42442986-42443073)
chr2 (262-349)||(771735-771822)
chr2 (262-349)||(16406130-16406217)
chr2 (262-349)||(32126267-32126354)
chr2 (265-349)||(17444117-17444201)
chr2 (262-349)||(18982545-18982632)
chr2 (262-332)||(2286918-2286988)
chr2 (262-349)||(31580815-31580902)
chr2 (262-344)||(26238621-26238703)
chr2 (262-349)||(35963691-35963777)
chr2 (264-330)||(26161814-26161880)
chr2 (265-349)||(6402885-6402969)
chr2 (262-343)||(4554381-4554463)
chr2 (265-349)||(41250714-41250798)
chr2 (168-311)||(12755843-12755984)
chr2 (262-312)||(26656286-26656336)
chr2 (265-349)||(7071611-7071694)
chr2 (262-304)||(17035840-17035882)
chr2 (262-304)||(17090348-17090390)
chr2 (14-63)||(26445780-26445829)
chr2 (264-332)||(45122154-45122222)
chr2 (267-306)||(28841257-28841296)
chr2 (268-312)||(33453139-33453183)
[»] chr3 (22 HSPs)
chr3 (168-349)||(11017260-11017436)
chr3 (264-349)||(45183981-45184066)
chr3 (168-349)||(6929879-6930060)
chr3 (262-349)||(40080820-40080907)
chr3 (264-349)||(35514997-35515082)
chr3 (269-344)||(34083207-34083282)
chr3 (265-349)||(19391148-19391231)
chr3 (262-349)||(19564595-19564682)
chr3 (263-324)||(27936177-27936238)
chr3 (284-349)||(45336859-45336924)
chr3 (265-349)||(1185591-1185675)
chr3 (265-349)||(5136295-5136377)
chr3 (265-349)||(6268503-6268587)
chr3 (267-349)||(22967527-22967609)
chr3 (265-349)||(39772792-39772876)
chr3 (262-312)||(43137306-43137356)
chr3 (302-349)||(33041951-33041998)
chr3 (262-312)||(37381814-37381864)
chr3 (262-312)||(22934744-22934794)
chr3 (262-312)||(31989209-31989259)
chr3 (262-312)||(53710578-53710628)
chr3 (264-312)||(42269185-42269233)
[»] scaffold0154 (1 HSPs)
scaffold0154 (262-349)||(32216-32303)
[»] scaffold0069 (1 HSPs)
scaffold0069 (265-349)||(18560-18644)
[»] scaffold0002 (1 HSPs)
scaffold0002 (265-349)||(479538-479622)
[»] scaffold0015 (1 HSPs)
scaffold0015 (262-312)||(214106-214156)
[»] scaffold0041 (1 HSPs)
scaffold0041 (14-63)||(18187-18236)
[»] scaffold0170 (1 HSPs)
scaffold0170 (265-312)||(9256-9303)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 16787012 - 16787191
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaa 267  Q
    |||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||          ||||||||||||||       ||||||    
T  16787012 caggaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttttt--taattttaataattaaaaaaatcgaaa 16787109  T
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16787110 taaaagaggtttatcaatttgtcaataaaagtacaatttaaaataggcttattaattaaaattgaccatgtaatatatgtga 16787191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 349
Target Start/End: Original strand, 34135802 - 34135971
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaaga 274  Q
    |||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||          | ||||||||||||       |||||||||||||    
T  34135802 tttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttt----ttattttaataattaaaaaa-tcgaaataaaaga 34135896  T
Q  275 ggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34135897 tgtttatcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 34135971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 349
Target Start/End: Complemental strand, 4405182 - 4405009
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaaga 274  Q
    |||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||          || |||||||||||       | |||||||||||    
T  4405182 tttatgaagctcgggcgaaaaatttatcccaaattatagcaacagtcataaatcaatttttttattta-ttttaataattaaaaaaattgaaataaaaga 4405084  T
Q  275 ggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  4405083 ggtttatcattttgtcaataaaagtacaatttaaaataagattattaattaaaattaaccatgtaatatatgtga 4405009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 23403153 - 23403069
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  23403153 aaataaaataggtttatcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtattatatgtga 23403069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 15839362 - 15839283
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  15839362 aaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaataggattattaattaaaattgaccacgtaatata 15839283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 29727463 - 29727550
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||    
T  29727463 tcgaaataaaagatgtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatatgtga 29727550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 36409572 - 36409486
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  36409572 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagg-ttattaattgaaattgaccatgtaatatacgtga 36409486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 40469946 - 40470033
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  40469946 tcgaaataaaagaggttcctcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 40470033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 42231991 - 42231915
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaat 341  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  42231991 aaataaaataggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccctgtaat 42231915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 3647876 - 3647940
Alignment:
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattga 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  3647876 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattga 3647940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 7279115 - 7279027
Alignment:
Q  262 tcgaaataaaagaggttt-atcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  7279115 tcgaaataaaataggttttatcatttagtcaacaaaagtacaatttaaaataagattattaattgaaattgatcatataatatacgtga 7279027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 27046900 - 27046841
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 321  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27046900 tcgaaataaaagaggtttatcattttgtcaacagaagtacaatttaaaatagggttatta 27046841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 3436319 - 3436235
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| ||| ||||    
T  3436319 aaataaaataggttcctcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatataagatacgtga 3436235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 24019472 - 24019556
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  24019472 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 24019556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 28524284 - 28524200
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  28524284 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 28524200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 39915600 - 39915516
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  39915600 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 39915516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 29632472 - 29632413
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaatt 324  Q
    ||||||| || | |||||||||| |||||||||||||||||||||||||| |||||||||    
T  29632472 aaataaatgaagcttatcattttatcaacaaaagtacaatttaaaatagggttattaatt 29632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 21958742 - 21958692
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  21958742 tcgaaataaaagaggttcttcattttttcaacaaaagtacaattttaaata 21958692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 32343046 - 32342996
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||| |  |||||||||||||||| |||||||| |||||    
T  32343046 tcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaata 32342996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 32355533 - 32355483
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||| |  |||||||||||||||| |||||||| |||||    
T  32355533 tcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaata 32355483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 32359652 - 32359602
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||| |  |||||||||||||||| |||||||| |||||    
T  32359652 tcgaaataaaagaggtatgccattttgtcaacaaaactacaatttgaaata 32359602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 32372183 - 32372133
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||| ||||||| | ||||||||||||||||| |||||||| |||||    
T  32372183 tcgaaatataagaggtatgtcattttgtcaacaaaactacaatttgaaata 32372133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 2727959 - 2728008
Alignment:
Q  292 acaaaagtacaatttaaaataggattattaattaaaattgatcatgtaat 341  Q
    ||||||||||||||||||||| | ||||||||| ||||||| | ||||||    
T  2727959 acaaaagtacaatttaaaatacggttattaattgaaattgaccctgtaat 2728008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 43142575 - 43142751
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaa 267  Q
    |||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||          | ||||||||||||       ||||||    
T  43142575 caggaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaattttt-----ttattttaataattaaaaaaatcgaaa 43142669  T
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43142670 taaaagaggtttatcaatttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 43142751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 349
Target Start/End: Original strand, 3291889 - 3292063
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaaga 274  Q
    |||||| |||||||| ||||||||||||| |||||||| |||  ||||||||||||          ||||||||||||||       | |||||||||||    
T  3291889 tttatggagcccgggcgaaaaatttatcccaaattatatcaatggtcataaatcaatttttttttttaattttaataattaaaaaaattgaaataaaaga 3291988  T
Q  275 ggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3291989 ggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 3292063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 7769736 - 7769557
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtca-taaatcaannnnnnnnnataattttaataattnnnnnnntcgaa 266  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| ||||||||| |||||             ||||||||||||||       |||||    
T  7769736 caggaaatttatggagcccgggcgaaaaatttatcctaaattatatcaacagtcaataaat---tctttttttttaattttaataattaaaaaaatcgaa 7769640  T
Q  267 ataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7769639 ataaaagaggtttatcattttgtcaataaaagtacaatttaaaatagaattattaattaaaattgaccatgtaatatatgtga 7769557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 35547134 - 35546952
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnat-aattttaataattnnnnnnntcgaa 266  Q
    |||||| |||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||          | |||||||||||||       | |||    
T  35547134 caggaaatttatggagtccgggcgaaaaatttatcccaaattatatcaacggtcataaatcaaatttttttttttaattttaataattaaaaaaattgaa 35547035  T
Q  267 ataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35547034 ataaaagaggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 35546952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 33135525 - 33135610
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  33135525 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatatgtga 33135610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 44157712 - 44157631
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatat 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44157712 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgatcatgtaatat 44157631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 30076730 - 30076817
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  30076730 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtga 30076817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 30215825 - 30215912
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  30215825 tcgaaataaaagaggtttatcattttgtcaataaaagtacaatttcaaataggattattaattaaaattgaccatgtaatatatgtga 30215912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 42332852 - 42332939
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42332852 tcgaaataaaagaggtttatcaatttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 42332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 28876394 - 28876480
Alignment:
Q  263 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  28876394 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtga 28876480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 50204169 - 50204253
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  50204169 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtga 50204253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 6689318 - 6689401
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgt 347  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6689318 gaaataaaagaggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgt 6689401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 13390526 - 13390613
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  13390526 tcgaaataaaagaggtttatcattttatcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatacgtga 13390613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 13398639 - 13398726
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||    
T  13398639 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattatcaattgaaattgaccatgtaatatacgtga 13398726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 10351975 - 10352057
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  10351975 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatata 10352057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 37577838 - 37577756
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  37577838 tcgaaataaaagaggtttatcattttgtcaacaaaaatacaatttaaattaggattattaattgaaattgatcatgtaatata 37577756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 1818743 - 1818657
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  1818743 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagg-ttattaattgaaattgaccatgtaatatacgtga 1818657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 36381428 - 36381515
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||    
T  36381428 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattaaaattgaccacgtaatatacgtga 36381515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 40530173 - 40530086
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  40530173 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 40530086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 263 - 349
Target Start/End: Original strand, 17510319 - 17510405
Alignment:
Q  263 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| || |||||||| ||||    
T  17510319 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataaggttattaattgaaattgaccacgtaatatacgtga 17510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 29319432 - 29319502
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattga 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  29319432 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattga 29319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 26449781 - 26449702
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaat 341  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||    
T  26449781 tcgaaataaaataggtttatcattttgtcaacaaaagtacaatgtaaaataggattattaattgaaattgaccctgtaat 26449702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 25931839 - 25931760
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| || ||||||||    
T  25931839 aaataaaagaggtttatcattttgttaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatata 25931760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 29995089 - 29995168
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  29995089 gaaataaaagaggtttatcattttgtcaacaaaa------tttaaaataggattattaattgaaattgaccatgtaatatacgtga 29995168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 13013274 - 13013190
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  13013274 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 13013190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 47501859 - 47501775
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  47501859 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 47501775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 6236547 - 6236485
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaatt 324  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||    
T  6236547 tcgaaataaaagaggtttatcattttatcaacaaaaatacaatttaaaatacggttattaatt 6236485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 20130314 - 20130249
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaatt 330  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  20130314 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaatt 20130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 26438360 - 26438444
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  26438360 aaataaatgaagtttatcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 26438444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 30111046 - 30110962
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||| |||||  | |||||||||||||||||||||||||||||| | ||||| ||| ||||||| ||||||||||| ||||    
T  30111046 aaataaaataggttctttattttgtcaacaaaagtacaatttaaaatatggttattgattgaaattgaccatgtaatatacgtga 30110962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 34406365 - 34406449
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  34406365 aaataaatgaagtttatcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 34406449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 43356990 - 43356906
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  43356990 aaataaatgaagtttatcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 43356906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 48131099 - 48131018
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||| |||||  || |||||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||||||||    
T  48131099 tcgaaataaaaaaggttcctccttttgtcaacaaaagtac-attttaaatagggttattaattgaaattgaccatgtaatata 48131018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 48990344 - 48990280
Alignment:
Q  277 tttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaat 341  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||| | ||||||    
T  48990344 tttatcattttgtcaataaaagtacaatttaaaatagagttattaattgaaattgaccctgtaat 48990280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 42843940 - 42843892
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaa 310  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  42843940 tcgaaataaaagaggttcgtcattttttcaacaaaagtacaatttaaaa 42843892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 8897874 - 8897921
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||  |||||||||||||||||||||||||| |||||    
T  8897874 aaataaaagaggttcgtcattttgtcaacaaaagtacaatttgaaata 8897921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 6689228 - 6689277
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaac 217  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  6689228 caggaaatttatggagcccgggcgaaaaatttatcctaaattatatcaac 6689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 42332765 - 42332827
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaa 230  Q
    |||||| |||||  |||||| | | ||||||||||| |||||||| |||||||||||||||||    
T  42332765 caggaaatttatagagcccgagcggaaaatttatcccaaattatatcaacagtcataaatcaa 42332827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 55464605 - 55464655
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  ||||||| |||||||||||| ||||| |||||    
T  55464605 tcgaaataaaagaggttcgtcattttttcaacaaaagtataatttgaaata 55464655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 21753574 - 21753622
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaa 310  Q
    ||||||||||| ||| |  |||||||||||| |||||||||||||||||    
T  21753574 tcgaaataaaataggctcgtcattttgtcaataaaagtacaatttaaaa 21753622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 25182827 - 25182874
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||| |||||  |||||||||||||||||| |||||||||||||    
T  25182827 gaaataaaa-aggttcgtcattttgtcaacaaaagcacaatttaaaata 25182874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 170 - 349
Target Start/End: Original strand, 12277844 - 12278021
Alignment:
Q  170 ggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaata 269  Q
    |||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||          ||||||||||||||       | ||||||    
T  12277844 ggaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttttt--taattttaataattaaaaaaattgaaata 12277941  T
Q  270 aaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12277942 aaagaggattatcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 12278021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 17330982 - 17331162
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnn-tcgaa 266  Q
    |||||| |||||| |||||||| ||||||||||||| |||||||| ||||||||||||||||           ||||||||||||||        || ||    
T  17330982 caggaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcattttttttt--taattttaataattaaaaaaaatcaaa 17331079  T
Q  267 ataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17331080 ataaaagaggtttatcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 17331162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 349
Target Start/End: Complemental strand, 31681542 - 31681367
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnat-aattttaataattnnnnnnntcgaaataaaag 273  Q
    |||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||          | |||||||||||||       | ||||||||||    
T  31681542 tttatggagcccgggcgaaaaatttatcctaaattatatcaacggtcataaatcaaatttttttttttaattttaataattaaaaaaattgaaataaaag 31681443  T
Q  274 aggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31681442 aggtttatcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtga 31681367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 349
Target Start/End: Complemental strand, 33431496 - 33431321
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnat-aattttaataattnnnnnnntcgaaataaaag 273  Q
    |||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||          | |||||||||||||       | ||||||||||    
T  33431496 tttatggagcccgggcgaaaaatttatcctaaattatatcaacggtcataaatcaaatttttttttttaattttaataattaaaaaaattgaaataaaag 33431397  T
Q  274 aggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33431396 aggtttatcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtga 33431321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 37255720 - 37255633
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  37255720 tcgaaataaaagaggtttatcattttgtcaataaaaatacaatttaaaataggattattaattaaaattgaccatgtaatatacgtga 37255633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 10036995 - 10036908
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||| ||||||    
T  10036995 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatacatgtga 10036908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 19986532 - 19986445
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||    
T  19986532 tcgaaataaaagaggtttatcattttgtcaacaaacgtacaatttaaaataggattattaattgaaattgaccacgtaatatacgtga 19986445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 43069931 - 43069847
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  43069931 aaataaaagaggtttatcatttagtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 43069847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 13819065 - 13818978
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  | |||||||| ||||    
T  13819065 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgactacgtaatatacgtga 13818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 16155979 - 16155892
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  ||||||| ||||    
T  16155979 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacataatatacgtga 16155892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 16332979 - 16333066
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  16332979 tcgaaataaaagaggtttatcattttgtcaacaaaattacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 16333066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 39656606 - 39656693
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  39656606 tcgaaataaaagaggtttatcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 39656693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 39435785 - 39435701
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  39435785 aaataaaagaggtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 39435701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 28801961 - 28801876
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||||| ||||    
T  28801961 gaaataaaagaggttcctcattttgtcaacaaaagtacaatttaaaatagggtttttaattgaaattgatcacgtaatatacgtga 28801876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 36292444 - 36292356
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatc-atgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||| | |||||||||| ||||    
T  36292444 tcgaaataaaagaggtttatcattttatcaacaaaagtacaatttaaaataaggttattaattgaaattgaccaatgtaatatacgtga 36292356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 1775457 - 1775544
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||| ||||    
T  1775457 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatatggttattgattgaaattgaccacgtaatatacgtga 1775544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 36292702 - 36292781
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || ||||||||    
T  36292702 aaataaaagaggtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatata 36292781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 26282399 - 26282483
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  26282399 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 26282483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 31500799 - 31500883
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||| |||||| |||||||||||||||||||   ||||||||||||||||||||| ||||||| || |||| ||||||||||| ||||    
T  31500799 tcgatataaaataggtttatcattttgtcaa---aagtacaatttaaaataggataattaattgaagttgaccatgtaatatacgtga 31500883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 1280811 - 1280761
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||||||||    
T  1280811 tcgaaataaaagaggctcgtaattttgtcaacaaaagtacaatttaaaata 1280761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 3055712 - 3055662
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||  || |||||||||| | |||||||||||||||||||    
T  3055712 tcgaaataaaagagacttgtcattttgtcgataaaagtacaatttaaaata 3055662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 22542114 - 22542066
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||  | ||||| |||||||||||||||||| |||||    
T  22542114 gaaataaaagaggttcgttattttttcaacaaaagtacaatttgaaata 22542066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 349
Target Start/End: Complemental strand, 26625903 - 26625745
Alignment:
Q  191 gaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaagaggtttatcattttgtc 290  Q
    ||||||||||||| |||||||| ||||| |||||||||||         |||||||||||||||       |||||||||||||||||||||||||||||    
T  26625903 gaaaaatttatcccaaattatatcaacaatcataaatcaatttttttttataattttaataattaaaaaaatcgaaataaaagaggtttatcattttgtc 26625804  T
Q  291 aacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26625803 aataaaagtacaatttcaaataggattattaattaaaattgaccatgtaatatatgtga 26625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 349
Target Start/End: Original strand, 38637390 - 38637548
Alignment:
Q  191 gaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaagaggtttatcattttgtc 290  Q
    |||||||||||||||||||||| ||| |||||||||||||          ||||||||||||||       |||||||||||||||||||||||||||||    
T  38637390 gaaaaatttatcctaaattatatcaatagtcataaatcaatttttttttttaattttaataattaaaaaaatcgaaataaaagaggtttatcattttgtc 38637489  T
Q  291 aacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38637490 aataaaagtacaatttaaaataggattattaaataaaattgaccatgtaatatatgtga 38637548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 169 - 349
Target Start/End: Original strand, 37001227 - 37001405
Alignment:
Q  169 aggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaat 268  Q
    ||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||          ||||||||||||||       | |||||    
T  37001227 aggaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttttt--taattttaataattaaaaaaattgaaat 37001324  T
Q  269 aaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  37001325 aaaagaggtttatcattttgtcaataaaagtacaatttaaaataggattattaattaaaattgacaatataatatatgtga 37001405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 349
Target Start/End: Original strand, 8866719 - 8866897
Alignment:
Q  169 aggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaat 268  Q
    ||||| |||||||||  |||| ||||||||||||| |||||||| |||||||||||||||||         | |||||||||||||       |||||||    
T  8866719 aggaaatttatgaagttcgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttttgta-aattttaataattaaaaaa-tcgaaat 8866816  T
Q  269 aaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  8866817 aaaagaggtttatcattttgtcaataaaagtacaatttaaaataagattattaattaaaattgaccacgtaatatatgtga 8866897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 349
Target Start/End: Original strand, 43183460 - 43183635
Alignment:
Q  175 tttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataa-ttttaataattnnnnnnntcgaaataaaag 273  Q
    ||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||          ||| |||||||||||       |  |||||||||    
T  43183460 tttatgaagcctgggcgaaaaatttatcctaaattatatcaacggtcataaatcaatttttttttttaaattttaataattaaaaaaattaaaataaaag 43183559  T
Q  274 aggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43183560 aggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 43183635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 7003714 - 7003627
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||    
T  7003714 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatatgattattaattgaaattgaccatgtaatatacgtga 7003627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 7049585 - 7049498
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||    
T  7049585 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatatgattattaattgaaattgaccatgtaatatacgtga 7049498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 34468415 - 34468500
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  34468415 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgatcacgtaatatacgtga 34468500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 3113201 - 3113288
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  | |||||||| ||||    
T  3113201 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgacaacgtaatatacgtga 3113288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 5556550 - 5556463
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  5556550 tcgaaataaaataggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 5556463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 36631904 - 36631817
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  36631904 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 36631817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 8395210 - 8395125
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| || | |||||| ||||    
T  8395210 gaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaataggtttattaattgaaattgaccacgcaatatacgtga 8395125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 14775677 - 14775761
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||| ||||    
T  14775677 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtga 14775761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 15226130 - 15226214
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||| |||||||| ||||    
T  15226130 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtga 15226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 36659245 - 36659189
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattatta 321  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36659245 aaataaaagaggtttatcattttgtcaataaaagtacaatttaaaataggattatta 36659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 33686619 - 33686553
Alignment:
Q  263 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaat 329  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  33686619 cgaaataaaataggtttatcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaat 33686553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 11019694 - 11019738
Alignment:
Q  288 gtcaacaaaagtacaatttaaaataggattattaattaaaattga 332  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||    
T  11019694 gtcaacaaaagtacaatttaaaatagggttattaattgaaattga 11019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 38575233 - 38575284
Alignment:
Q  262 tcgaaataaaagaggtttatca-ttttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  38575233 tcgaaataaaagaggttcatcatttttttcaacaaaagtacaacttaaaata 38575284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 10224121 - 10224071
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  |||||||||||| |||| |||||||| |||||    
T  10224121 tcgaaataaaagaggttcttcattttgtcaataaaaatacaatttgaaata 10224071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 27387251 - 27387301
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||| ||||||||  ||||||| ||||||||||||||| ||||||||    
T  27387251 tcgaaatagaagaggttcgtcattttttcaacaaaagtacaacttaaaata 27387301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 45197873 - 45197823
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||| ||  ||||||| |||||||||||||||||| |||||    
T  45197873 tcgaaataaaagagattcgtcattttttcaacaaaagtacaatttgaaata 45197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 13715134 - 13715182
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||| |  |||||||||||| ||||||||||||| |||||    
T  13715134 gaaataaaagaggctcgtcattttgtcaataaaagtacaatttgaaata 13715182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 28997915 - 28997730
Alignment:
Q  164 gagtcaggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntc 263  Q
    |||||||||| |||||| ||| |||| ||||||||||||| |||||||| |||| ||||||||||||          ||||||||||||||       |     
T  28997915 gagtcaggaaatttatggagctcgggcgaaaaatttatcccaaattatatcaacggtcataaatcaatttttttttttaattttaataattaaaaaaatt 28997816  T
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28997815 gaaataaaagaggtttatcattttgtcaataaaactataatttaaaataggattattaattaaaattgaccatgtaatatatgtga 28997730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 29744358 - 29744271
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||| ||||    
T  29744358 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgagattgaccatgtaatatacgtga 29744271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 33228430 - 33228517
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  33228430 tcgaaataaaagatgtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 33228517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 34947905 - 34947992
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  34947905 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 34947992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 13838884 - 13838800
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  13838884 aaataaaagagatttatcattttatcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 13838800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 31028033 - 31028120
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| |  |||||||| ||||||| ||||||||||| ||||    
T  31028033 tcgaaataaaagaggttccttattttgtcaacaaaagtacaatttaaaatatggctattaattgaaattgaccatgtaatatacgtga 31028120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 399703 - 399619
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  399703 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 399619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 34253186 - 34253131
Alignment:
Q  294 aaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||| ||||||||| ||||| |||| |||||||| ||||    
T  34253186 aaaagtacaatttaaaatagggttattaattgaaattaatcacgtaatatacgtga 34253131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 182 - 349
Target Start/End: Complemental strand, 35908722 - 35908557
Alignment:
Q  182 agcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaataaaagaggtttat 281  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||||||          ||||||||||||||       ||||||||||||||||||||    
T  35908722 agcccgggcgaaaaatttatcccaaattatatcaacagtcataaatcaatttttttt--taattttaataattaaaaaaatcgaaataaaagaggtttat 35908625  T
Q  282 cattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  35908624 cattttgtcaataaaaatacaatttaaaataggattattaattaaaattgacaatgtaatatatgtga 35908557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 11957437 - 11957524
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11957437 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattgaaattgaccatgtaatatatgtga 11957524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 17446378 - 17446294
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  17446378 aaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaataggattattaattgaaattgaccatgtaatatacgtga 17446294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 15209367 - 15209454
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  15209367 tcgaaataaaagaggttcatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 15209454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 23314082 - 23313995
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  23314082 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 23313995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 32981139 - 32981228
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtgatgtc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |   ||||||| ||||||||    
T  32981139 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccgcctaatatacgtgatgtc 32981228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 7434510 - 7434423
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||  | |||||||| ||||    
T  7434510 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgacaacgtaatatacgtga 7434423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 42310019 - 42310099
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| || ||||||||    
T  42310019 gaaataaaagatgtttatcattttgtaaacaaaagtacaatttaaaatatgattattaattgaaattgaccacgtaatata 42310099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 3830040 - 3829961
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaat 341  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||    
T  3830040 tcgaaataaaataggtttataattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccctgtaat 3829961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 349
Target Start/End: Complemental strand, 33490441 - 33490381
Alignment:
Q  289 tcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  33490441 tcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 33490381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 41971337 - 41971421
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||  || ||||| ||||||||||||||||||||||||| || |||||| ||||||| ||| ||||||| ||||    
T  41971337 aaataaaagaggttcctcgttttgacaacaaaagtacaatttaaaatagggttgttaattgaaattgaccatataatatacgtga 41971421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 30558953 - 30559000
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||| | ||||||||||||| ||||||||||||| |||||    
T  30558953 aaataaaagaggctcatcattttgtcaataaaagtacaatttgaaata 30559000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 17875008 - 17874958
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||| |||| |||  ||||||| ||||||||||||||||||||||||    
T  17875008 tcgaaatagaagaagttcgtcattttatcaacaaaagtacaatttaaaata 17874958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 26272874 - 26272924
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||| |||||  || ||||||||||||||||||||||| |||||    
T  26272874 tcgaaataaaaaaggttcgtctttttgtcaacaaaagtacaatttgaaata 26272924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 41753182 - 41753132
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||||| ||||||||  |||||||| |||||||| |||||    
T  41753182 tcgaaataaaagaggttcatcatttttacaacaaaaatacaatttgaaata 41753132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 45419769 - 45419583
Alignment:
Q  164 gagtcaggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataa-ttttaataattnnnnnnnt 262  Q
    ||||||| || |||||| |||||||| ||||||||||||| |||||||| |||| ||||||||||||          ||| |||||||||||       |    
T  45419769 gagtcagaaaatttatggagcccgggcgaaaaatttatcccaaattatatcaacggtcataaatcaatttttttttttaaattttaataattaaaaaaat 45419670  T
Q  263 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
     ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45419669 tgaaataaaagaggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 45419583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 8058424 - 8058509
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8058424 gaaataaaagaggtttatcattttgtcaacaatagtacaatttaaaataggattattaattgaaattgatcatgtaatatatgtga 8058509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 42443073 - 42442986
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  42443073 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 42442986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 771822 - 771735
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  771822 tcgaaataaaagaggtttatcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatataagtga 771735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 16406217 - 16406130
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  16406217 tcgaaataaaagaggtttatcattttgttaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 16406130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 32126267 - 32126354
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  32126267 tcgaaataaaagagatttatcattttgtcaacaaaagtacagtttaaaatagggttattaattgaaattgatcacgtaatatacgtga 32126354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 17444117 - 17444201
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  17444117 aaataaaagaggtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 17444201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 18982632 - 18982545
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| | || |||||||| ||||    
T  18982632 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaatatggttattaattgaaatttaccacgtaatatacgtga 18982545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 2286988 - 2286918
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattga 332  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  2286988 tcgaaataaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattga 2286918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 31580815 - 31580902
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||| || |||||||| ||||    
T  31580815 tcgaaataaaggaggtttatcatttcgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccacgtaatatacgtga 31580902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 26238703 - 26238621
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    |||||||||||||||||  |||||| ||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  26238703 tcgaaataaaagaggttcctcatttcgtcaagaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatata 26238621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 35963777 - 35963691
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||  | |||||||| ||||    
T  35963777 tcgaaataaaagaggtt-atcattttgtcaacaaaagtacaacttaaaatagggttattaattgaaattgacaacgtaatatacgtga 35963691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 26161814 - 26161880
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaatt 330  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  26161814 gaaataaaataggtttatcattttgtcaataaaagtacaatttaaaatagggttattaattgaaatt 26161880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 6402885 - 6402969
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  6402885 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 6402969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 4554381 - 4554463
Alignment:
Q  262 tcgaaataaaaga-ggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatat 343  Q
    ||||||||||| | ||||| ||||||||||||||||| |||||||||||||| | ||||||||| ||||||| ||||||||||    
T  4554381 tcgaaataaaataaggtttctcattttgtcaacaaaaatacaatttaaaatatggttattaattgaaattgaccatgtaatat 4554463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 41250714 - 41250798
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  41250714 aaataaatgaagtttatcattttatcaacaaaagtgcaatttaaaatagggttattaattgaaattaaccacgtaatatacgtga 41250798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 12755843 - 12755984
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaa 267  Q
    |||||| |||||| ||| |||| ||||||||||||| |||||||| |||| |||||||||||           ||||||||||||||       | ||||    
T  12755843 caggaaatttatggagctcgggcgaaaaatttatcccaaattatatcaacggtcataaatcattttttttt--taattttaataattaaaaaaattgaaa 12755940  T
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaat 311  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  12755941 taaaagaggtttatcattttgtcaataaaactacaatttaaaat 12755984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 26656286 - 26656336
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  26656286 tcgaaataaaagaggtatgtcattttgtcaacaaaagtacaatttaaaata 26656336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 7071611 - 7071694
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||   ||||||||| ||||||| ||| ||||||| ||||    
T  7071611 aaataaaagaggttcctcattttgtcaacagaagtacaatttaaaataaatttattaattgaaattgaccat-taatatacgtga 7071694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 17035840 - 17035882
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaat 304  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  17035840 tcgaaataaaagaggtttctcattttgtcaacaaaagtacaat 17035882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 17090348 - 17090390
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaat 304  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  17090348 tcgaaataaaagaggtttctcattttgtcaacaaaagtacaat 17090390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 26445780 - 26445829
Alignment:
Q  14 caatcactctaattgtcgcataatcaagccaacctgcaatatctagtttt 63  Q
    |||||||||||||||||||||||| |||||||||||  || |||||||||    
T  26445780 caatcactctaattgtcgcataatgaagccaacctggtatgtctagtttt 26445829  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 45122222 - 45122154
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattga 332  Q
    ||||||| ||| |||| ||||||| ||||||||||||||  |||||||||| ||| | |||||||||||    
T  45122222 gaaataatagaagtttctcattttatcaacaaaagtacatattaaaatagggttaattattaaaattga 45122154  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 28841296 - 28841257
Alignment:
Q  267 ataaaagaggtttatcattttgtcaacaaaagtacaattt 306  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  28841296 ataaaagagggttatcattttgtcaataaaagtacaattt 28841257  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 33453139 - 33453183
Alignment:
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||| |||||  |||||||||||||||||||||||||| |||||    
T  33453139 taaaataggttcgtcattttgtcaacaaaagtacaatttgaaata 33453183  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 11017260 - 11017436
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaa 267  Q
    |||||| |||| | |||||||| ||||||||||||| |||||||| ||| |||||||||||||          | ||||||||||||       ||||||    
T  11017260 caggaaatttacggagcccgggcgaaaaatttatcccaaattatatcaatagtcataaatcaattttt-----ttattttaataattaaaaaaatcgaaa 11017354  T
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  11017355 taaaagaggtttatcaatttgtcaataaaagtacaatttaaaataggattattaattaaaatcgaccatgtaatatatgtga 11017436  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 45184066 - 45183981
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45184066 gaaataaaagaggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaattgaccatgtaatatatgtga 45183981  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 6929879 - 6930060
Alignment:
Q  168 caggaattttatgaagcccgggtgaaaaatttatcctaaattataccaacagtcataaatcaannnnnnnnnataattttaataattnnnnnnntcgaaa 267  Q
    |||||| |||||| |||| ||| ||||||||||||  |||||||| |||| ||||||||||||           |||||||||||||       | ||||    
T  6929879 caggaaatttatggagcctgggcgaaaaatttatcgcaaattatatcaacggtcataaatcaaatttttttttaaattttaataattaaaaaaattgaaa 6929978  T
Q  268 taaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  6929979 taaaagaggtttatcattttgtcaataaaactacaatttaaaataggattattaattaaaatttaccatgtaatatgtgtga 6930060  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 40080820 - 40080907
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| || |||||||| ||||    
T  40080820 tcgaaataaaaaaggtttatcattttgtcaacaaaagtacaatttaaaataaggttattaattgaaattgaccacgtaatatacgtga 40080907  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 35515082 - 35514997
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  35515082 gaaataaaaaaggtttatcattttatcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 35514997  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 34083207 - 34083282
Alignment:
Q  269 aaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatata 344  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| || ||||||||    
T  34083207 aaaagaggtttatcattttgtcaacaaaagtgcaatttaaaatagggttattaattgaaattgaccacgtaatata 34083282  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 19391231 - 19391148
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||| || |||||||| ||||    
T  19391231 aaataaaagaggtttatcattttatcaacaaaagtacaatttaaaatagg-ttattaactgaaattgaccacgtaatatacgtga 19391148  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 19564595 - 19564682
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| || ||||||||||||||| |||||||||||| ||||||| | ||||||||| ||||||| ||||||||||| ||||    
T  19564595 tcgaaataaaaaagatttatcattttgtcatcaaaagtacaatgtaaaatatggttattaattgaaattgaccatgtaatatacgtga 19564682  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 27936238 - 27936177
Alignment:
Q  263 cgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaatt 324  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27936238 cgaaataaaataggtttatcattttgtcaacaaaagtaaaatttaaaatagggttattaatt 27936177  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 45336924 - 45336859
Alignment:
Q  284 ttttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  45336924 ttttgtcaacaaaagtacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 45336859  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 1185591 - 1185675
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||  | |||||||||||||||||  ||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  1185591 aaataaaagaggttccttattttgtcaacaaaagtgaaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 1185675  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 5136377 - 5136295
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  5136377 aaataaaagaggttc-tcagtttgtcaacaaaaatacaatttaaaataggattattaattgaaattgat-atgtaatatacgtga 5136295  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 6268503 - 6268587
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  6268503 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatatacgtga 6268587  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 22967527 - 22967609
Alignment:
Q  267 ataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  22967527 ataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaattgaaattaaccacgtaatatacgtga 22967609  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 39772876 - 39772792
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  39772876 aaataaatgaagtttatcattttatcaacaaaaggacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 39772792  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 43137356 - 43137306
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  43137356 tcgaaataaaagaggtttgtcattttttcaacaaaaatacaatttaaaata 43137306  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 33041998 - 33041951
Alignment:
Q  302 aatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||||    
T  33041998 aattttaaataggattattaattaaaattgactatgtaatatatgtga 33041951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 37381814 - 37381864
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  37381814 tcgaaataaaagaggttcgtcactttgtcaacaaaagtacgatttaaaata 37381864  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 22934744 - 22934794
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||| |  || |||||||||||||||||||||||| |||||    
T  22934744 tcgaaataaaagagatccatgattttgtcaacaaaagtacaatttgaaata 22934794  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 31989259 - 31989209
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  ||| ||| ||||||||||||||| ||||||||    
T  31989259 tcgaaataaaagaggttcgtcactttttcaacaaaagtacaacttaaaata 31989209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 53710628 - 53710578
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||| |||  ||||||| ||||||||||||||| ||||||||    
T  53710628 tcgaaataaaagaagttcgtcattttttcaacaaaagtacaacttaaaata 53710578  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 42269185 - 42269233
Alignment:
Q  264 gaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||| ||| ||||||||| |||||||||| ||||| |||||    
T  42269185 gaaataaaagagatttgtcattttgtaaacaaaagtataatttgaaata 42269233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 32303 - 32216
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  32303 tcgaaataaaaaaggtttatcattttgtcaacaaaaatacaatttaaaatagggttattaattgaaattgaccatgtaatatacgtga 32216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 18644 - 18560
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||| || |||||||| ||||    
T  18644 aaataaaagaggtttatcattttatcaacaaaagtacaatttaatatagggttattaattgaaattgaccacgtaatatacgtga 18560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 479538 - 479622
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaataggattattaattaaaattgatcatgtaatatatgtga 349  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| | || |||||||| ||||    
T  479538 aaataaatgaagtttatcattttatcaacaaaagtacaatttaaaatagggttattaatttaaattaaccacgtaatatacgtga 479622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 214106 - 214156
Alignment:
Q  262 tcgaaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    |||||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  214106 tcgaaataaaagaggttcttcattttttcaacaaaagtacaattttaaata 214156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 18236 - 18187
Alignment:
Q  14 caatcactctaattgtcgcataatcaagccaacctgcaatatctagtttt 63  Q
    |||||||||||||||||||||||| |||||||||||  || |||||||||    
T  18236 caatcactctaattgtcgcataatgaagccaacctggtatgtctagtttt 18187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 9303 - 9256
Alignment:
Q  265 aaataaaagaggtttatcattttgtcaacaaaagtacaatttaaaata 312  Q
    ||||||||||||||  ||||||| |||||||||||||||||| |||||    
T  9303 aaataaaagaggttcgtcattttttcaacaaaagtacaatttgaaata 9256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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