View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_5 (Length: 772)

Name: NF6973_low_5
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_5
NF6973_low_5
[»] chr1 (1 HSPs)
chr1 (1-772)||(38838112-38838882)


Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Complemental strand, 38838882 - 38838112
Alignment:
Q  1 tgggtctttgtataactagctgcctcaggatactctgcacatatccatattcaaaagaaaattaactacaacttgtgnnnnnnnnnnn--------ggtt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||    
T  38838882 tgggtctttgtataactagctgcctcaggatactctgcacatatccatattcaaaagaaaattaactacaacttgtgtttttttttttttttttttggtt 38838783  T
Q  93 cttcaccaagcaagtccaatttaaatgggtgcgaaccattctggggcagtcactagtttacctactccaaatagaacctttggtaaagggagaaatttga 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38838782 cttcaccaagcaagtccaatttaaatgggtgcgaaccattctggggcagtcactagtttacctactccaaatagaacctttggtaaagggagaaatttga 38838683  T
Q  193 aactaaataactcaatctcactttggttcaaaatatttgcttgaaatttctgtagtaattaaatattactcgaagaagataaaacctcaaatttcagtat 292  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38838682 aactaaataactcaatctcactttggttcaaaatatttgctcgaaatttctgtagtaattaaatataactcgaagaagataaaacctcaaatttcagtat 38838583  T
Q  293 aacttcaaataatttgaaccttgatccaaacttcaactttttatgatataactttacaatataactctaagaagttatattttaaagtttggatcaaggt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||            |||||| ||||||||||||||||||||||||||||||||    
T  38838582 aacttcaaataatttgaaccttgatccaaacttcaactttttacaatat------------taactcgaagaagttatattttaaagtttggatcaaggt 38838495  T
Q  393 tcactgtcagagacaccttcttacaagcaattactttaaatgtagtaaatataactcgaagaagataaaattggatcaaggttgttttcagtataagaca 492  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38838494 tcactgtcagagacacctttttacaagcaattactttaaatgtagtaaatataactcgaagaagataaaattggatcaaggttgttttcagtataagaca 38838395  T
Q  493 tgtgatagcagcaatatcaaataacagttgaatacttttgactttcgcaaataattcacaactgttaaataattttgcttaaataatttagaagggattg 592  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38838394 tgtgatagcagcaatatcaaataacagttcaatacttttgactttcgcaaataattcacaactgttaaataattttgcttaaataatttagaagggattg 38838295  T
Q  593 ttgctattctgcctcataatggcaaaacaatttgttggcagcatacttattttttgtctacttctgatatgcatgaatggattaaggctgatggtgatag 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38838294 ttgctattctgcctcataatggcaaaacaatttgttggcagcatacttattttttgtctacttctgatatgcatgaatggattaaggctgatggtgatag 38838195  T
Q  693 tttgatttatcacctgttcttggcatgctcgctatcgctacttagccaatgtcaaacag---agaggggggtattttaatttc 772  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  38838194 tttgatttctcacctgttcttggcatgctcgctatcgctacttagccaatgtcaaacagatcagaggggggtattttaatttc 38838112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University