View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_52 (Length: 345)
Name: NF6973_low_52
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 38536203 - 38536517
Alignment:
| Q |
19 |
ataacgatatcgtggattaatcaaagaacaaaatcagcctaaccactagaaagcaggcatgtcaatatatcaattggaaacaccacatcctatacacaat |
118 |
Q |
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| T |
38536203 |
ataacgatatcgtggattaatcaaagaacaaaatcagcctaaccactagaaagcaggcatgtcaatatatcaattggaaacaccacatcctatacacaat |
38536302 |
T |
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| Q |
119 |
ctaacatactataaaaagtatttcatcctgtcatcccttctcatagcattatatacagcttggacctgaaaatacaacgaaattcaatatcaaggtacat |
218 |
Q |
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| T |
38536303 |
ctaacatactataaaaagtatttcatcctgtcatccctcctcatagcattatatacagcttggacctgaaaatacaacgaaattcaatatcaaggtacat |
38536402 |
T |
|
| Q |
219 |
tcacccaggatcatttgcagagacacaatttacactatataacattcagaatttcatgttcattttaagaataaatccatgattagaaaaaacagaaaac |
318 |
Q |
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| T |
38536403 |
tcacccaggatcatttgcatagacacaatttacactatataacattcataatttcatgttcattttaagaataaatccatgattagaaaaaacagaaaac |
38536502 |
T |
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| Q |
319 |
gtagaagaggatatt |
333 |
Q |
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| T |
38536503 |
gtagaagaggatatt |
38536517 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 53229752 - 53229709
Alignment:
| Q |
147 |
tgtcatcccttctcatagcattatatacagcttggacctgaaaa |
190 |
Q |
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| T |
53229752 |
tgtcacccctcctcatagcattatacacagcttggacctgaaaa |
53229709 |
T |
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