View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_53 (Length: 343)

Name: NF6973_low_53
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_53
NF6973_low_53
[»] chr7 (6 HSPs)
chr7 (15-234)||(47543398-47543617)
chr7 (117-234)||(4609652-4609769)
chr7 (79-234)||(10315043-10315198)
chr7 (79-234)||(31030341-31030496)
chr7 (108-226)||(17116404-17116522)
chr7 (110-207)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (15-231)||(32160044-32160259)
chr1 (70-236)||(15259370-15259536)
chr1 (88-189)||(26260768-26260869)
chr1 (103-207)||(27568382-27568486)
chr1 (77-207)||(27363725-27363855)
chr1 (95-204)||(44675097-44675206)
chr1 (15-55)||(1951913-1951953)
chr1 (137-231)||(38133069-38133163)
chr1 (130-172)||(9484879-9484921)
chr1 (108-212)||(12688172-12688276)
chr1 (130-198)||(25392345-25392413)
chr1 (114-204)||(4889452-4889542)
chr1 (120-194)||(27264588-27264662)
chr1 (114-207)||(6723718-6723811)
chr1 (154-207)||(10686232-10686285)
chr1 (108-213)||(48973644-48973749)
chr1 (83-147)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (15-234)||(32196725-32196944)
chr6 (75-234)||(7824105-7824264)
chr6 (109-231)||(11324442-11324564)
chr6 (104-237)||(17292763-17292896)
chr6 (88-207)||(18673363-18673482)
chr6 (134-192)||(9200938-9200996)
chr6 (88-207)||(5667346-5667465)
chr6 (108-226)||(34714895-34715013)
chr6 (114-207)||(2682761-2682854)
chr6 (130-203)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (15-234)||(4740971-4741187)
chr3 (109-206)||(14788867-14788964)
chr3 (70-234)||(13043321-13043485)
chr3 (70-234)||(13051398-13051562)
chr3 (95-207)||(20017410-20017522)
chr3 (88-204)||(47160990-47161106)
chr3 (95-207)||(6894192-6894304)
chr3 (114-207)||(25845647-25845740)
chr3 (135-168)||(33388601-33388634)
chr3 (108-160)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (15-172)||(16610602-16610759)
chr5 (15-234)||(31706337-31706552)
chr5 (75-202)||(29651767-29651894)
chr5 (82-234)||(704490-704642)
chr5 (134-234)||(30722538-30722638)
chr5 (82-234)||(27482646-27482798)
chr5 (89-179)||(29994645-29994735)
chr5 (163-207)||(22922506-22922550)
chr5 (89-195)||(18967864-18967970)
chr5 (158-207)||(22924159-22924208)
chr5 (83-207)||(19314979-19315103)
chr5 (108-160)||(21041995-21042047)
chr5 (163-195)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (15-168)||(8090506-8090659)
chr2 (70-234)||(40638766-40638930)
chr2 (89-204)||(31640241-31640356)
chr2 (70-234)||(20948080-20948244)
chr2 (110-207)||(27708189-27708286)
chr2 (278-327)||(43451281-43451330)
chr2 (109-207)||(44735977-44736075)
chr2 (108-204)||(27009200-27009296)
chr2 (77-150)||(9420722-9420795)
chr2 (88-201)||(45131107-45131220)
chr2 (117-204)||(9840768-9840855)
chr2 (101-203)||(33645830-33645932)
chr2 (130-195)||(21563423-21563488)
chr2 (83-204)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (89-225)||(52577965-52578101)
chr4 (114-213)||(9831377-9831476)
chr4 (114-234)||(30972395-30972515)
chr4 (108-207)||(22653286-22653385)
chr4 (114-207)||(11131194-11131287)
chr4 (88-160)||(19846574-19846646)
chr4 (114-198)||(43001717-43001801)
chr4 (117-207)||(8830949-8831039)
chr4 (107-204)||(25130441-25130538)
chr4 (130-198)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (108-207)||(8462514-8462613)
chr8 (130-195)||(5751992-5752057)
chr8 (108-198)||(33282823-33282913)
chr8 (138-236)||(39435484-39435582)
chr8 (114-207)||(37929106-37929199)
chr8 (114-174)||(33191210-33191270)
chr8 (88-148)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (15-91)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (130-198)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 47543617 - 47543398
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47543617 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 47543518  T
Q  115 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 214  Q
    ||||||||| |||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47543517 actaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataacc 47543418  T
Q  215 gggcaatctttgacattaaa 234  Q
    |  |||||||||||||||||    
T  47543417 gaacaatctttgacattaaa 47543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 4609652 - 4609769
Alignment:
Q  117 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgg 216  Q
    |||||||||||  ||| ||||||| ||||||||||| | |||||| ||||||||||||| |||||||| | ||||||||||||||||||||  |||| |     
T  4609652 taagccaccacccatggtaattgaggggaagagaaatatacttcgccttcaaccacgtataagcaagcaatttaatcttatcgaccacctgattaacaga 4609751  T
Q  217 gcaatctttgacattaaa 234  Q
    ||| ||||||| ||||||    
T  4609752 gcattctttgatattaaa 4609769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 234
Target Start/End: Complemental strand, 10315198 - 10315043
Alignment:
Q  79 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 178  Q
    ||||||| ||||||| ||||| |||||  ||||| | ||||||||||||   || ||||||| |||||||||   | |||||  ||||||||| |||||     
T  10315198 aagaaacacttagcctatgcccaaaatagtaaacgggctaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccatgtaaag 10315099  T
Q  179 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  10315098 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 10315043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 31030341 - 31030496
Alignment:
Q  79 aagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaa 178  Q
    ||||||| ||||||| ||||| |||||  ||||| |  |||||||||||   || ||||||| |||||||||   | |||||  |||||||||||||||     
T  31030341 aagaaacacttagcctatgcccaaaatagtaaacgggttaagccaccacccgtggtaattgaggggaagagaggaatacttcaccttcaaccacgtaaag 31030440  T
Q  179 gcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    ||||||||||||||||| || ||||||||  |||||| ||| ||||||||||||||    
T  31030441 gcaagcgacttaatcttgtctaccacctgattaaccgagcattctttgacattaaa 31030496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 17116404 - 17116522
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||||||   ||||||| |||||||||||||| || | |||| |||||||||| |||| || || |||||||||||||| ||||| ||    
T  17116404 taaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatcttatcaaccacttg 17116503  T
Q  208 gataaccgggcaatctttg 226  Q
     || |||| ||||||||||    
T  17116504 tattaccgagcaatctttg 17116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 38154001 - 38153904
Alignment:
Q  110 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||||   ||| || || |||||||||| |  ||| |||  |||||||||| ||||||| || ||||||||| |||||||||||||    
T  38154001 aacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaaaagcgagagacttaatcctatcgaccacctg 38153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 32160259 - 32160044
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 114  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32160259 ggacatcagagtcaagaacaatatatacaaaagttacctaagagatcataaacaaaaa-cagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32160161  T
Q  115 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 214  Q
    |||||||||||||  ||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32160160 actaagccaccaccaatggtaattgaaggaaagagaaataaacttcgtcctcaaccacgtaaaagcaagcgacttaatcttatcgatcacctggataacc 32160061  T
Q  215 gggcaatctttgacatt 231  Q
    | |||||||||||||||    
T  32160060 gagcaatctttgacatt 32160044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 15259536 - 15259370
Alignment:
Q  70 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 169  Q
    |||||||||||||||||||||||| ||||| |  ||| ||||| |||||||| |||||  ||| ||||||| ||||||||||| | |||||| |||||||    
T  15259536 aaaacagaaaagaaactcttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttcaac 15259437  T
Q  170 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 236  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||  || | ||||||||||||||    
T  15259436 cacgtaaaagcaagcgatttaatcttgtcgaccacctgattaaccgaacattatttgacattaaata 15259370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 26260869 - 26260768
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 187  Q
    |||||||||||| || ||| ||||  ||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  26260869 ttagccaatgcccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagac 26260770  T
Q  188 tt 189  Q
    ||    
T  26260769 tt 26260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 27568486 - 27568382
Alignment:
Q  103 aatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacc 202  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||| | || |||    
T  27568486 aatgacaaacagactaagccaccacccatggtaattgaagggaagagaaacaaattttgccttcaaccacgtaaaagcaagagacttaatcgtttctacc 27568387  T
Q  203 acctg 207  Q
    |||||    
T  27568386 acctg 27568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 27363725 - 27363855
Alignment:
Q  77 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaa 176  Q
    ||||||||  ||||||| ||||| |||||| ||||| ||||||||||| ||  ||| ||||||| || |||||||    |||||| ||||||||||| ||    
T  27363725 aaaagaaaaccttagcctatgcccaaaatggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttcaaccacgaaa 27363824  T
Q  177 aagcaagcgacttaatcttatcgaccacctg 207  Q
    | |||||||||||||||||||||||||||||    
T  27363825 aggcaagcgacttaatcttatcgaccacctg 27363855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 44675206 - 44675097
Alignment:
Q  95 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 194  Q
    ||||| || ||||||||| |||||||||||||   |||||||||||||||||| ||| |||| |||| |||||||||| | || ||||| | ||||||||    
T  44675206 atgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgcaagtggcttaatct 44675107  T
Q  195 tatcgaccac 204  Q
    |||| |||||    
T  44675106 tatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1951913 - 1951953
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951913 ggacatcagagtcaagaacaatatatacaaaagttgcctaa 1951953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 38133069 - 38133163
Alignment:
Q  137 ttgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacatt 231  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||||||  |||||||| ||||| | |||||| ||||||| |||| ||||| ||||    
T  38133069 ttgaagggaagaaaaacaaatctcgccttcaaccacgtataagcaaaagacttaatgttatctatcacctgaataaccgagcaaactttgtcatt 38133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 9484921 - 9484879
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccac 172  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  9484921 atgataattgaagggaagagaaacaaatttcgccttcaaccac 9484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 12688276 - 12688172
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    ||||| |||||||||||||   |||||| || ||||||||||    |||||||  |||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  12688276 taaacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacctg 12688177  T
Q  208 gataa 212  Q
     ||||    
T  12688176 cataa 12688172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 25392345 - 25392413
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 198  Q
    ||||||||||||||||| | ||  |||||||| |||||||||| || | || |||||||||||||||||    
T  25392345 atgataattgaagggaaaataagaaaacttcgccttcaaccacatacatgcgagcgacttaatcttatc 25392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 4889542 - 4889452
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 204  Q
    ||||||| ||||||  |||||| || ||||||||||||   ||||||| ||| |||||| | || |||||||||||||| ||||| |||||    
T  4889542 gactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccac 4889452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 27264662 - 27264588
Alignment:
Q  120 gccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 194  Q
    ||||||||  ||| ||||||| ||||||||||    |||||| ||||||||||| ||| ||||||||||||||||    
T  27264662 gccaccacccatggtaattgaggggaagagaagagtacttcgccttcaaccacgaaaaggcaagcgacttaatct 27264588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 6723718 - 6723811
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||   |||| ||||||| ||| ||| |  |||||||  |||||||||| ||||||  || ||||||||||| |||||||||||    
T  6723718 gactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 6723811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 10686232 - 10686285
Alignment:
Q  154 aaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||| ||||||||||| ||| | ||| |||||||||||||| ||||||||    
T  10686232 aaacttcgccttcaaccacgcaaatgtaagggacttaatcttatccaccacctg 10686285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 48973749 - 48973644
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||  ||| |||||| | ||||  | | ||||||| || || ||||||||    
T  48973749 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctg 48973650  T
Q  208 gataac 213  Q
     |||||    
T  48973649 tataac 48973644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 36098596 - 36098660
Alignment:
Q  83 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaag 147  Q
    ||||||||||| ||||| || ||| | ||| |||||||||||||   ||||||||||||||||||    
T  36098596 aactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaag 36098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 32196725 - 32196944
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  32196725 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaagcagaaaagaaactcttagccaatgcctaaaatggtaaacgg 32196824  T
Q  115 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataacc 214  Q
    ||||||||| |||  ||| ||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  32196825 actaagccatcacccatgttaattgaagggaagagaactaaacttcgtcttcaaccatgtaaaagtaagcgacttaatctggtcgaccacctggataacc 32196924  T
Q  215 gggcaatctttgacattaaa 234  Q
    |  |||||||||||||||||    
T  32196925 gaacaatctttgacattaaa 32196944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 7824105 - 7824264
Alignment:
Q  75 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 174  Q
    ||||||||||| ||||||| ||||| |||||| | ||| | ||||||||||||  ||| ||||||| |||||||||   | |||||| ||||||||||||    
T  7824105 agaaaagaaacacttagcctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgt 7824204  T
Q  175 aaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    ||| ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||    
T  7824205 aaaggcaagcgacttaatcttgtcgaccacctgattaaccgagcattctttgacattaaa 7824264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 11324564 - 11324442
Alignment:
Q  109 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctgg 208  Q
    |||| ||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||| || |||| |||     
T  11324564 aaacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctga 11324465  T
Q  209 ataaccgggcaatctttgacatt 231  Q
    | ||||| |||| ||||| ||||    
T  11324464 agaaccgagcaaactttgtcatt 11324442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 17292763 - 17292896
Alignment:
Q  104 atgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 203  Q
    ||||||||| |||||||||| ||   |||||||||||||||||||||| |||| || |  ||||||||| | || || || ||||||||||||  |||||    
T  17292763 atgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaatgacca 17292862  T
Q  204 cctggataaccgggcaatctttgacattaaatac 237  Q
    |||| |||| ||  || |||||| ||||||||||    
T  17292863 cctgcataatcgatcattctttgccattaaatac 17292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 18673482 - 18673363
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 187  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||   ||| | |||  |||||||||| |||||| ||| |||    
T  18673482 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaagactgacatatttctccttcaaccacataaaagtaagagac 18673383  T
Q  188 ttaatcttatcgaccacctg 207  Q
    ||||| ||||| ||||||||    
T  18673382 ttaattttatccaccacctg 18673363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 9200938 - 9200996
Alignment:
Q  134 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaat 192  Q
    ||||||| ||||||||||| | |||||| |||| |||||||||||||||||||||||||    
T  9200938 taattgaggggaagagaaatatacttcgccttctaccacgtaaaagcaagcgacttaat 9200996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 5667346 - 5667465
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 187  Q
    |||||| |||||||||||  ||||| |||||| ||||||   |||||||||||||| |||||  | |||| |||||||||||||  | ||||  ||  ||    
T  5667346 ttagcctatgcctaaaatagtaaacggactaatccaccaaccatgataattgaaggaaagagttataaacctcgtcttcaaccatttgaaagtcagtaac 5667445  T
Q  188 ttaatcttatcgaccacctg 207  Q
    |||||| |||||||||||||    
T  5667446 ttaatcctatcgaccacctg 5667465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 34715013 - 34714895
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||||||   ||| ||||||| ||||||||||  ||| || |  ||||||||| ||||||  || |||||||||||||| ||||| ||    
T  34715013 taaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaagtgagagacttaatcttatcaaccacgtg 34714914  T
Q  208 gataaccgggcaatctttg 226  Q
     || |||| ||| ||||||    
T  34714913 tattaccgagcattctttg 34714895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 2682854 - 2682761
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||   |||| |||||||| ||| || |  ||| |||  |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  2682854 gactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaaaagcaagggacttaatcttgtcgacaacctg 2682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 7155495 - 7155422
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgacca 203  Q
    ||||||||||||||| ||||||  ||| ||   ||||||||||||||||| |||  ||||||||||||| ||||    
T  7155495 atgataattgaagggtagagaagaaaatttttccttcaaccacgtaaaagtaagaaacttaatcttatcaacca 7155422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 4741187 - 4740971
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 113  Q
    |||||||||||||||||||||||||||||| |||||||| ||| || |||    |||||||||||||||||||||||||| |||||||||||| |||||     
T  4741187 ggacatcagagtcaagaacaatatatacaatagttgcctgaacagagcat----aaaaaacagaaaagaaactcttagcctatgcctaaaatggtaaacg 4741092  T
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 213  Q
    |||||||||| |||  ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4741091 gactaagccatcacccatggtaattgaagggaagagaaatatacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctagataac 4740992  T
Q  214 cgggcaatctttgacattaaa 234  Q
    || ||||||||||||||||||    
T  4740991 cgagcaatctttgacattaaa 4740971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 14788964 - 14788867
Alignment:
Q  109 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacct 206  Q
    |||| ||||||||||||||| ||| |||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||    
T  14788964 aaactgactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatcttatctaccacct 14788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 13043485 - 13043321
Alignment:
Q  70 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 169  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13043485 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13043386  T
Q  170 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13043385 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 13051562 - 13051398
Alignment:
Q  70 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 169  Q
    |||| ||||||||||||||||||| ||||| |||||| | ||| |  |||||||||||  ||| || |||| ||||||||| | | |||||| |||||||    
T  13051562 aaaatagaaaagaaactcttagcctatgcccaaaatggtgaacgggttaagccaccacccatggtagttgaggggaagagagaaatacttcgccttcaac 13051463  T
Q  170 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    |||| ||| |||||||||||||| || |||||||||||  |||||| ||| ||||||||||||||    
T  13051462 cacgcaaaggcaagcgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaa 13051398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 20017410 - 20017522
Alignment:
Q  95 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 194  Q
    ||||| |||||| | ||| ||| |||||||||   ||| || || |||||||| |||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  20017410 atgcccaaaatggtgaacggacaaagccaccagccatggtagtttaagggaagtgaaacaaatttcttcttcaaccacgtataagcaagagacttaatct 20017509  T
Q  195 tatcgaccacctg 207  Q
    | || ||||||||    
T  20017510 tttctaccacctg 20017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 47161106 - 47160990
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 187  Q
    |||||||||||||||||  |||||| | |||||||||||   ||| |||||||| |||||||||  |||||||  |||||||||| ||||||  | | ||    
T  47161106 ttagccaatgcctaaaacaataaacggtctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaac 47161007  T
Q  188 ttaatcttatcgaccac 204  Q
    |||||| |||| |||||    
T  47161006 ttaatcctatccaccac 47160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 6894304 - 6894192
Alignment:
Q  95 atgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatct 194  Q
    |||||||||||  ||||| |||||| ||||||   ||||||||||||||||||||  | |||| ||| |||||||||  | ||||  ||  ||||||||     
T  6894304 atgcctaaaatagtaaacggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaaccatttgaaagtcagtaacttaatcc 6894205  T
Q  195 tatcgaccacctg 207  Q
    |||||||||||||    
T  6894204 tatcgaccacctg 6894192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 25845740 - 25845647
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||   ||| || || ||||| ||||||  |||||||| |||||||||| | ||||  ||||||||||| ||||| ||||||||    
T  25845740 gactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctg 25845647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 33388601 - 33388634
Alignment:
Q  135 aattgaagggaagagaaacaaacttcgtcttcaa 168  Q
    ||||||||||||||||| ||||||||||||||||    
T  33388601 aattgaagggaagagaagcaaacttcgtcttcaa 33388634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 6926049 - 6925997
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 160  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  6926049 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 6925997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 16610759 - 16610602
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 114  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  16610759 ggacatcagagtcaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactattagccaatgcctaaaatggtaaacgg 16610660  T
Q  115 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccac 172  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  16610659 actaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 31706337 - 31706552
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaaca 113  Q
    |||||||||||||||||||||||| ||||| |||||||| |||  | ||||||     |||||||||||||||||||||| ||||| || ||| |||||     
T  31706337 ggacatcagagtcaagaacaatatttacaatagttgcctgaacaaagcataaa-----aacagaaaagaaactcttagcctatgcccaatatggtaaacg 31706431  T
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 213  Q
    ||||||||||||||  ||| ||||||| ||||||||||| | |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31706432 gactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctttaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataac 31706531  T
Q  214 cgggcaatctttgacattaaa 234  Q
    |   |||||||||||||||||    
T  31706532 caaacaatctttgacattaaa 31706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 29651767 - 29651894
Alignment:
Q  75 agaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 174  Q
    ||||||||||  ||||||| ||||| || ||| ||||| ||||||||||||||  ||||||||||| | |||||||||   ||||||  ||||||||||     
T  29651767 agaaaagaaaaccttagcctatgcccaacatggtaaacggactaagccaccacccatgataattgaggagaagagaaaagtacttcgcattcaaccacga 29651866  T
Q  175 aaaagcaagcgacttaatcttatcgacc 202  Q
    |||||||||| |||||||||| ||||||    
T  29651867 aaaagcaagcaacttaatcttgtcgacc 29651894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 704490 - 704642
Alignment:
Q  82 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 181  Q
    ||||| |||||||||||| |  ||| ||||| ||||||| ||||||  |||||||||||| |||||| || ||||||| | ||||||||| | ||||| |    
T  704490 aaacttttagccaatgcccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactttgccttcaaccaagcaaaagta 704589  T
Q  182 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    ||  ||||||||||||| | |||| | |||||||  |||||||| || |||||    
T  704590 agaaacttaatcttatctatcacccgaataaccgaacaatctttaacgttaaa 704642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 30722538 - 30722638
Alignment:
Q  134 taattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaa 233  Q
    ||||||| |||||||||   | |||||| ||||||||||||||| |||||||||||||| || || ||||||||  |||||| ||| |||||||||||||    
T  30722538 taattgaggggaagagaggaatacttcgccttcaaccacgtaaaggcaagcgacttaatattgtctaccacctgattaaccgagcattctttgacattaa 30722637  T
Q  234 a 234  Q
    |    
T  30722638 a 30722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 27482646 - 27482798
Alignment:
Q  82 aaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagca 181  Q
    |||||||||||| ||||| || ||| | ||| |||||||||||||   |||||||||||||||||| | |||  | |||  ||||||||||  ||| ||     
T  27482646 aaactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcg 27482745  T
Q  182 agcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    || |||||||||||||| |||||||| || |||| ||| |||||  |||||||    
T  27482746 agggacttaatcttatcaaccacctgaattaccgagcattctttatcattaaa 27482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 29994735 - 29994645
Alignment:
Q  89 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaag 179  Q
    ||||||||||||||||   ||||| || ||||||||||   ||||||||||||||||||| ||  |||||||  |||||||||| ||||||    
T  29994735 tagccaatgcctaaaacagtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccacttaaaag 29994645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 22922506 - 22922550
Alignment:
Q  163 cttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||    
T  22922506 cttcaaccacgtaaaagcaagagacttaatcttctctaccacctg 22922550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 18967970 - 18967864
Alignment:
Q  89 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 188  Q
    ||||||||||| |  || |||||  |||||||||| ||   ||||| ||| || ||||||||| |||| |||| |||||||||| |||||| ||| ||||    
T  18967970 tagccaatgcccagcataataaatggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacataaaagaaagtgact 18967871  T
Q  189 taatctt 195  Q
    |||||||    
T  18967870 taatctt 18967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 22924159 - 22924208
Alignment:
Q  158 ttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||| |||||||||||||||| |||| ||||||||||| || ||||||||    
T  22924159 ttcgccttcaaccacgtaaaaccaagagacttaatcttctctaccacctg 22924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 19314979 - 19315103
Alignment:
Q  83 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 182  Q
    |||| |||||| |||||||  ||| ||||| | |||||||||||   |||||||||  ||||||   || |||| |||| |||||||||| |||| |  |    
T  19314979 aactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtga 19315078  T
Q  183 gcgacttaatcttatcgaccacctg 207  Q
    | |||||||||||||| ||||||||    
T  19315079 gtgacttaatcttatcaaccacctg 19315103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 21042047 - 21041995
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 160  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||  |||||||||    
T  21042047 taaacggactaagccaccacccatgataattaaagggaagagttacaaacttc 21041995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 22923149 - 22923181
Alignment:
Q  163 cttcaaccacgtaaaagcaagcgacttaatctt 195  Q
    ||||||||||||||||||||| |||||||||||    
T  22923149 cttcaaccacgtaaaagcaagagacttaatctt 22923181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 8090659 - 8090506
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcctaactgatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatgataaacag 114  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  8090659 ggacatcagagttaagaacaatatatacaaaagttgcctaacagatcataaacaaaaaacagaaaagaaactcttagccaatgcctaaaatggtaaacgg 8090560  T
Q  115 actaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaa 168  Q
    |||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  8090559 actaagccaccacccatgataattgaagggaagagaaataaactccgtcttcaa 8090506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 40638766 - 40638930
Alignment:
Q  70 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 169  Q
    |||||| |||||||||| |||||| ||| | |||||  ||||| ||||||||||||||  ||| |||||||||||||||||| || |||||  | |||||    
T  40638766 aaaacataaaagaaacttttagcctatgtccaaaatcgtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttcaacatcaac 40638865  T
Q  170 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    |||||||| | |||||| |||||||| |||||||||||  |||| | ||| ||||||||||||||    
T  40638866 cacgtaaaggtaagcgatttaatcttgtcgaccacctgattaactgagcactctttgacattaaa 40638930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 31640356 - 31640241
Alignment:
Q  89 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 188  Q
    ||||| ||||||| |||  ||||| |||||||||||||   ||| ||||||| |||||||||| |||| |||| ||||||||||||||||||||| ||||    
T  31640356 tagcctatgcctataattgtaaacggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgact 31640257  T
Q  189 taatcttatcgaccac 204  Q
    |||||||||| |||||    
T  31640256 taatcttatctaccac 31640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 20948244 - 20948080
Alignment:
Q  70 aaaacagaaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaac 169  Q
    |||| ||||||||||  ||||||| |  || || ||| ||||| ||||||||||||||  ||| ||||||| | ||||||||  | |||||| |||||||    
T  20948244 aaaaaagaaaagaaaaccttagcctacacccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaac 20948145  T
Q  170 cacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaa 234  Q
    |||| ||| ||||||||||||||||| | |||||||||   ||||| ||| |||||| |||||||    
T  20948144 cacgaaaaggcaagcgacttaatcttgttgaccacctgagaaaccgagcagtctttggcattaaa 20948080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 27708189 - 27708286
Alignment:
Q  110 aacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||| ||||||||||   ||||  |||||||||||||| | |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||    
T  27708189 aacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaagcgagcgacttaatcttatcaaccacctg 27708286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 43451330 - 43451281
Alignment:
Q  278 gtgtgcatttgaattagtggaagcgtgtggtacgcacttgtaggatgatg 327  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43451330 gtgtgcatttgaattagtggaagcgtgtggtgcgcacttgtaggatgatg 43451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 44735977 - 44736075
Alignment:
Q  109 aaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||| |   |||| ||||||||||||||| |  |||||||| |||||||||| ||||||  || ||||||||||| |||||||||||    
T  44735977 aaacagactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctg 44736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 27009296 - 27009200
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 204  Q
    ||||| |||||||||||||   ||| ||||||||||||||||||  ||| |||| |||||| ||| ||||||| || |||||||||||||| |||||    
T  27009296 taaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagacttaatcttatcaaccac 27009200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 9420722 - 9420795
Alignment:
Q  77 aaaagaaactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagaga 150  Q
    ||||||||  ||||||| |||||||||||  ||||| | ||||||||||||  ||||||||||| |||||||||    
T  9420722 aaaagaaaaccttagcctatgcctaaaatagtaaacgggctaagccaccacccatgataattgaggggaagaga 9420795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 45131107 - 45131220
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgac 187  Q
    |||||||||||| |  ||| ||||  ||||||||||||||  |||||||||||||||||||||| || | |||  |||||||||| | ||||   |||||    
T  45131107 ttagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaaagtttgcgac 45131206  T
Q  188 ttaatcttatcgac 201  Q
     ||||||| |||||    
T  45131207 ataatcttgtcgac 45131220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 9840855 - 9840768
Alignment:
Q  117 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 204  Q
    ||||||||||   |||||||||||| ||||||| | |||| || | |||||| ||| ||||||| ||||| ||||||||||| |||||    
T  9840855 taagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 33645830 - 33645932
Alignment:
Q  101 aaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcga 200  Q
    |||||| | |||||||||| ||||||   ||| |||||||| ||||||| | |||| ||   |||||||||| |||| || ||||||||||||||||| |    
T  33645830 aaaatggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaa 33645929  T
Q  201 cca 203  Q
    |||    
T  33645930 cca 33645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 21563488 - 21563423
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 195  Q
    ||||||||| || | |||||||||||| || | | ||||||||||||||| ||| |||||||||||    
T  21563488 atgataatttaatgaaagagaaacaaattttgccctcaaccacgtaaaagaaagtgacttaatctt 21563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 30505838 - 30505717
Alignment:
Q  83 aactcttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaa 182  Q
    |||| |||||| ||||| || ||| |||||||||||| ||||||   |||||||||||||||||| |||  ||| |||  ||||||| |  |||| || |    
T  30505838 aactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcga 30505739  T
Q  183 gcgacttaatcttatcgaccac 204  Q
    |  ||||||||||||| |||||    
T  30505738 gaaacttaatcttatcaaccac 30505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 52578101 - 52577965
Alignment:
Q  89 tagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgact 188  Q
    ||||| ||||||| ||||  ||||  ||||||||||||   ||||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  52578101 tagcctatgcctagaatggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggact 52578002  T
Q  189 taatcttatcgaccacctggataaccgggcaatcttt 225  Q
    |||||||||| | |||||| | ||||| |||| ||||    
T  52578001 taatcttatctatcacctgaagaaccgagcaaacttt 52577965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 9831476 - 9831377
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 213  Q
    |||||||||||||   |||||||||||||||||| | ||| || |||| |||||||||| |||||||||| ||||| |||||||| |||||||| |||||    
T  9831476 gactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatccaccacctgaataac 9831377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 30972395 - 30972515
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataac 213  Q
    |||||||||||||   |||||| |||||||||||||||  ||| |||| ||||| |||| | ||||  ||||||||||| ||||| |||||||| ||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  214 cgggcaatctttgacattaaa 234  Q
     | ||| |||||| |||||||    
T  30972495 tgagcactctttgccattaaa 30972515  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 22653385 - 22653286
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||||||   |||||||||||||| ||   || |||| |||| |||||||||| |||| |  ||||| ||||||||||| ||||||||    
T  22653385 taaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaatcttatcaaccacctg 22653286  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 11131194 - 11131287
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||   ||||||||| ||||||||||  |||||||||  ||||||||||  |||||  ||| |||||||| |||| ||||||||    
T  11131194 gactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccactgaaaagatagcaacttaatcctatctaccacctg 11131287  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 19846646 - 19846574
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttc 160  Q
    |||| ||||||| || ||| ||||| |||||| |||||||  |||||||||||||||||||||| || |||||    
T  19846646 ttagacaatgcccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttc 19846574  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 43001801 - 43001717
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 198  Q
    ||||||||||||||  ||||||||||||  |||||| |  |||||||| |||||||||| |||| |  || ||||||||||||||    
T  43001801 gactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacataaatgttagtgacttaatcttatc 43001717  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 8830949 - 8831039
Alignment:
Q  117 taagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||| | ||| ||||||||||||||| ||| ||| |||  ||||||| || ||||||  ||||||||||| || || ||||||||    
T  8830949 taagccaccagtcatggtaattgaagggaagataaagaaatttctccttcaactacataaaagtgagcgacttaattttgtcaaccacctg 8831039  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 25130441 - 25130538
Alignment:
Q  107 ataaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccac 204  Q
    |||||| |||||||||||||   |||||| |||| || ||||| | |||| |||  |||||||||| | ||||| || ||||| ||||||||||||||    
T  25130441 ataaacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccac 25130538  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 48337036 - 48336968
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 198  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  48337036 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 48336968  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 8462514 - 8462613
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||||||||   |||||||||||||||||||||| |||| |||| |||||||||| | || |  || |||||||||||||| ||||||||    
T  8462514 taaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 5752057 - 5751992
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatctt 195  Q
    ||||||||||| |||||||||   | |||||| |||||||||||||||  ||||||||||||||||    
T  5752057 atgataattgaggggaagagaggaatacttcgccttcaaccacgtaaagacaagcgacttaatctt 5751992  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 33282913 - 33282823
Alignment:
Q  108 taaacagactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 198  Q
    ||||| |||||||||||||   |||||||||||  || |||||| |||| ||   |||||||||| |||||| |||||||||||| |||||    
T  33282913 taaacggactaagccaccaaccatgataattgagagggagagaagcaaatttttccttcaaccacctaaaagtaagcgacttaattttatc 33282823  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 39435484 - 39435582
Alignment:
Q  138 tgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctggataaccgggcaatctttgacattaaata 236  Q
    |||| ||||||||| |||| |||| |||||||||| | ||  | || |||||||||||||| |||||||| | ||||| ||| |||||| |||| ||||    
T  39435484 tgaaaggaagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaata 39435582  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 37929199 - 37929106
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatcgaccacctg 207  Q
    |||||||||||||   |||||| || |||||||||| |  ||| |||  |||||||||| |||| || || ||||||||| |||||||||||||    
T  37929199 gactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacctg 37929106  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 33191210 - 33191270
Alignment:
Q  114 gactaagccaccactgatgataattgaagggaagagaaacaaacttcgtcttcaaccacgt 174  Q
    |||||||||||||   |||||||||||||||||||| | |||| |||  ||||||||||||    
T  33191210 gactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccacgt 33191270  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 38738543 - 38738483
Alignment:
Q  88 ttagccaatgcctaaaatgataaacagactaagccaccactgatgataattgaagggaaga 148  Q
    ||||||||||||||||||  ||||| | |||||||||||   ||||||||||| |||||||    
T  38738543 ttagccaatgcctaaaatagtaaacgggctaagccaccaaccatgataattgaggggaaga 38738483  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 19937 - 20009
Alignment:
Q  15 ggacatcagagtcaagaacaatatatacaaaagttgcct-aactgatcataaacaaaaaacagaaaagaaactcttag 91  Q
    |||||||||||||||||||||||| ||||| |||||||| ||| || |||     |||||||||||||||||||||||    
T  19937 ggacatcagagtcaagaacaatatttacaatagttgcctgaacagagcat-----aaaaacagaaaagaaactcttag 20009  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 24558 - 24490
Alignment:
Q  130 atgataattgaagggaagagaaacaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttatc 198  Q
    ||||| ||||||||||||||||  ||| |||| |||||||||| | ||||  ||||||||||| |||||    
T  24558 atgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatc 24490  T

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