View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_55 (Length: 337)
Name: NF6973_low_55
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 29955755 - 29955565
Alignment:
| Q |
17 |
acttgtaagaaaccccagattcagattctaataaagaagcggtttttgtgtaacctaatgaatataaagactggagtatgatacgaatgaattcgtgttt |
116 |
Q |
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| T |
29955755 |
acttgtaagaaaccccagattcagattctaataaagaagcggtttttgtgtaacctaatgaatataaagactggagtatgatacgaatgaattcgtgttt |
29955656 |
T |
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| Q |
117 |
attgattaacccttttgaaccaagtgtctcagaagaattattctccattgtttcatgcgatttgagaaaaggagtgagaacgcgatcgaat |
207 |
Q |
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| T |
29955655 |
gttgattaacccttttgaaccaagtgtctcagaagaattattctccattgtttcatgcgatttgagaaaaggagtgagaacgcgatcgaat |
29955565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 29955529 - 29955440
Alignment:
| Q |
237 |
tgtgttttgggtcgttggttggttcccactgtgttatgttaaaaagacggttttattgttatctgctgagtgggtcgtcttctgcttctt |
326 |
Q |
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| T |
29955529 |
tgtgttttgggtcgttggttggttcccactgtgttatgttaaaaagacggttttattgttatctgctgagtgggtcgtcttctgcttctt |
29955440 |
T |
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