View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_58 (Length: 329)
Name: NF6973_low_58
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 44065519 - 44065230
Alignment:
| Q |
16 |
aagaaaaagcaaagaaaaatacattattgtacaaagtgccggctaaaagtgacctgccaactacttcatgacgagggagagcacattaaactttatcggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44065519 |
aagaaaaagcaaagaaaaatacattattgtacaa-gtgccggctaaaagtgacctgccaactacttcatgacgagggagagcacattaaactttatcggt |
44065421 |
T |
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| Q |
116 |
tattgaatcgttaatggtggcttatcaatctatattaagccaaaacttgtcgactctttttggtttgttgtttacgtaaatacaatctacatgagttagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44065420 |
tattgaatcgttaatggtggcttatcaatctatattaagccaaaacttgtcgactctttttggtttgttgtttacgtaaatacaatctacatgagttagt |
44065321 |
T |
|
| Q |
216 |
tgattaattaattatgaatatggcatggagttagagagagtgtcgagagcaacaatgcgcttcaatgctgcaaaatctatgagactttaac |
306 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44065320 |
tgattaattaattatgaatatggcatgaagttagagagagtgtcgagagcaacaatgcgcttcaatgctgcaaaatctactagactttaac |
44065230 |
T |
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