View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_59 (Length: 325)
Name: NF6973_low_59
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 30872236 - 30871993
Alignment:
| Q |
15 |
tataaggagttggatagcattcaaaaccaatctttagtctaccctgattgtagtttcatcttacttctttaatttactacgtacatataatctttctctt |
114 |
Q |
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| T |
30872236 |
tataaggagttggatagcattcaaaaccaatctttagtctaccctgattgtaatttcatcttacttctttaatttactac----atataatctttctctt |
30872141 |
T |
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| Q |
115 |
ttctttgcacttgcatgttttcaagtgtattgatggaaggactgtttgatttactgtacagattatttgaatccatttcatgcatatgatgaagggaatc |
214 |
Q |
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| T |
30872140 |
ttctttgcacttgcatgttt-caagtgtattgatggaaggactgtttcatttactgtacagattatttgaatccatttcatgcatatgatgaagggaatc |
30872042 |
T |
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| Q |
215 |
ttacatggctggtaagtgctaattcttaactttactttactttttgtca |
263 |
Q |
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| T |
30872041 |
ttacatggctggtaagtgctaattcttaactttacttcactttttgtca |
30871993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 30871976 - 30871925
Alignment:
| Q |
261 |
tcatttggtcactcctttcttgataatcagttaccatggatatgttcctctt |
312 |
Q |
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| T |
30871976 |
tcatttggtcactcctttcttgataaccagttaccatagatattttcctctt |
30871925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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