View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_66 (Length: 315)
Name: NF6973_low_66
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 1772519 - 1772790
Alignment:
| Q |
19 |
atcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttccttaccagag |
118 |
Q |
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| T |
1772519 |
atcaggttgtttgtctccagaagaagcgtcttgctcagttgactcctttgatggttgttcagttgctttagatggctccttgtcattttccttaccagag |
1772618 |
T |
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| Q |
119 |
tcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaactt |
218 |
Q |
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| T |
1772619 |
tcctcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaactt |
1772718 |
T |
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| Q |
219 |
cctccgaaggagcattttccaaaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttgatgtccat |
305 |
Q |
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| T |
1772719 |
cctccg---------------aaggagcattttcctctgtatctgtatctgtttctgcctcagcaaccttcttttcttgatgtccat |
1772790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 2534349 - 2534233
Alignment:
| Q |
122 |
tcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcct |
221 |
Q |
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|||||| ||||||||||| ||||||| || ||||||| |||||||| || || |||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2534349 |
tcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtattatctttagatacatcttgaacttcct |
2534250 |
T |
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| Q |
222 |
ccgaaggagcattttcc |
238 |
Q |
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| T |
2534249 |
ctgaagaagcgttttcc |
2534233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 2525604 - 2525689
Alignment:
| Q |
153 |
gaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcctccgaaggagcattttcc |
238 |
Q |
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||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
2525604 |
gaatctctttggtatcggtaggctcagccgtttcttctgaattatctttagattcatcttgaatttcctcagaatgagcattttcc |
2525689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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