View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_67 (Length: 307)
Name: NF6973_low_67
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 32559158 - 32558878
Alignment:
| Q |
11 |
gatggacatcagagatacattataacaaccacaagtttgttaaaatataagtcacttgattttctcactttatcctttattgactttagaagagtctaat |
110 |
Q |
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| T |
32559158 |
gatggatatcagagatacattataacaaccacaaatttgttaaaatataagtcacttgattttctcactttatcctttattgactttagaagagtctaat |
32559059 |
T |
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| Q |
111 |
tcgaccaaaaacctacattgttcaccctcattgtcttatgtgcctatgtagacagcagaatagaatggggaggggaaccaacttgtccttataggcatac |
210 |
Q |
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| T |
32559058 |
tcgaccaaaaaactacattgttcaccctcattgtcttatgtgcctatgtagacagcagaaaagaatggggaggggaaccaacttgtccttataggcatac |
32558959 |
T |
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| Q |
211 |
aaaaggagaaagatgtatcactaatgaggactagtagtgaagagaatgagcatgatgatggtgatgatgaataagtggttgg |
292 |
Q |
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| T |
32558958 |
aaaaggagaaa-ttgtatcactagtgaggactagtagtgaagagaatgagcatgatgatggtgatgatgaataagtggttgg |
32558878 |
T |
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Back To:
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 37576157 - 37576230
Alignment:
| Q |
211 |
aaaaggagaaagatgtatcactaatgaggactagtagtgaagagaatgagcatgatgatggtgatgatgaataagtg |
287 |
Q |
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| T |
37576157 |
aaaaggagaaagatgcataacaaatgatgtctagtagtgaagagagtgagcatgatgatg---atgatgaataagtg |
37576230 |
T |
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