View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_69 (Length: 293)
Name: NF6973_low_69
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 55 - 277
Target Start/End: Complemental strand, 23457152 - 23456930
Alignment:
| Q |
55 |
ggtcaggtcaatggtttgtattttaccacaatatcaagattataaacaaaattgtgactgcaaaaacattttagaaccacggttaaaaacaaataaaagc |
154 |
Q |
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| T |
23457152 |
ggtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagc |
23457053 |
T |
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| Q |
155 |
tgctattatttattaattactcttaaccatggttctaaaatgctcttgaggttgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatg |
254 |
Q |
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| T |
23457052 |
tgctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaatttttttaaaaaccttgatattgcggcaaaatacaaacaaatg |
23456953 |
T |
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| Q |
255 |
taatcataatttgctgatatgat |
277 |
Q |
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||||||||||||| || |||||| |
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| T |
23456952 |
taatcataatttgttgttatgat |
23456930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 23466521 - 23466307
Alignment:
| Q |
55 |
ggtcaggtcaatggtttgtattttaccacaatatcaagattataaacaaaattgtgactgcaaaaacattttagaaccacggttaaaaacaaataaaagc |
154 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
23466521 |
ggtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagc |
23466422 |
T |
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| Q |
155 |
tgctattatttattaattactcttaaccatggttctaaaatgctcttgaggttgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatg |
254 |
Q |
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| T |
23466421 |
tgctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaatttttttaaaaaccttgatattgcggcaaaatacaaacaaatg |
23466322 |
T |
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| Q |
255 |
taatcataatttgct |
269 |
Q |
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| T |
23466321 |
caatcataatttgct |
23466307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 23536420 - 23536222
Alignment:
| Q |
68 |
gtttgtattttaccacaatatcaagattataaacaaaattgtgactgcaaaaacattttagaaccacggttaaaaacaaataaaagctgctattatttat |
167 |
Q |
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|||||||||||||| |||||| || |||||||||||||||||| |||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |
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| T |
23536420 |
gtttgtattttaccgcaatattaaagttataaacaaaattgtgatcgcaaaagcattttagaaccatggttaagagcaaataaaagctgctattatttat |
23536321 |
T |
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| Q |
168 |
taattactcttaaccatggttctaaaatgctcttgaggttgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatgtaatcataattt |
266 |
Q |
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| T |
23536320 |
taattactcttaactatggttctaaaatgctcttgaggttgcaacttttttaaaaaccttgaaattgcggcgaaatacaaacaaatgcaatcataattt |
23536222 |
T |
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