View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_70 (Length: 289)

Name: NF6973_low_70
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_70
NF6973_low_70
[»] chr2 (4 HSPs)
chr2 (17-275)||(8146465-8146723)
chr2 (51-259)||(30545272-30545469)
chr2 (93-259)||(44154333-44154488)
chr2 (94-150)||(17947871-17947927)
[»] chr4 (5 HSPs)
chr4 (93-276)||(33464385-33464562)
chr4 (195-275)||(48570292-48570369)
chr4 (37-84)||(48569406-48569453)
chr4 (94-150)||(32894635-32894691)
chr4 (94-150)||(49347148-49347204)
[»] chr5 (1 HSPs)
chr5 (93-277)||(6006790-6006968)
[»] chr1 (2 HSPs)
chr1 (37-151)||(49420084-49420198)
chr1 (94-216)||(51051174-51051296)
[»] chr6 (2 HSPs)
chr6 (97-167)||(29647386-29647457)
chr6 (49-216)||(23593127-23593294)
[»] chr8 (2 HSPs)
chr8 (100-151)||(35840464-35840515)
chr8 (212-251)||(35840390-35840429)
[»] chr7 (1 HSPs)
chr7 (35-84)||(9096-9145)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 8146723 - 8146465
Alignment:
Q  17 agtatatatgttgaagataaggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcat 116  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||    
T  8146723 agtatatatgttgaagataaggtgaagtttaacatgggaaagggaagttgttttccatgatgggaaagttttttttaaccattagattaaagaggtgcat 8146624  T
Q  117 acattttatgatgggttgtccacaccatatatttcctctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcga 216  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8146623 acattttatgatggtttgtccacaccatatatttcccctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcga 8146524  T
Q  217 ccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttgatgt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8146523 ccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttaatgt 8146465  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 30545469 - 30545272
Alignment:
Q  51 tgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 150  Q
    |||||||||||||||||||  |||||||||||||        ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  30545469 tgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T
Q  151 cctctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaaccc 250  Q
    || ||||||||||||||||||||||            |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30545369 cccctctcttctccatagtggctca-----------agatccagttttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaaccc 30545281  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 44154333 - 44154488
Alignment:
Q  93 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttcctctctcttctccatagtggctcacaatttgtctcggatct 192  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||            ||||     
T  44154333 aaccattaaattaaagaggtgcacacattttatgatggtttgtccacaccatatatttcccctctcttctccatagtggctca-----------agatcc 44154421  T
Q  193 aattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattca 259  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44154422 agttttctcactcttgttgtgcgaccagatctcaaaatccattaattttttaaaacccattgattca 44154488  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 17947927 - 17947871
Alignment:
Q  94 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 150  Q
    ||||| |||||||||||||||||| ||||||  ||||  ||||||||||||||||||    
T  17947927 accataagattaaagaggtgcatagattttaaaatggtctgtccacaccatatattt 17947871  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 276
Target Start/End: Complemental strand, 33464562 - 33464385
Alignment:
Q  93 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatc 191  Q
    ||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||| | ||||||||||||| |||||||||   ||||||||||||    
T  33464562 aaccattagattaaaaaggtgcacacattttatgatggtttctccacaccatatatttcacactctcttctccatggtggctcac---ttgtctcggatc 33464466  T
Q  192 taattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttgatgtc 276  Q
     | |||||||||||   |||||||||| |||||| |||||||||||||||| ||||||||||| ||| || |||||||| |||||    
T  33464465 cagttttctcactc---ttgtgcgacctgatctc-aaacccattaatttttgaaaacccattgcttccttatgttgtttaatgtc 33464385  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 48570369 - 48570292
Alignment:
Q  195 ttttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttgatgt 275  Q
    |||||||||| || |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||    
T  48570369 ttttctcacttttattgtgcgaccagatctcaaaaccca---attttttaaaacccattgattcattctgttgtttaatgt 48570292  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 48569406 - 48569453
Alignment:
Q  37 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 84  Q
    ||||||||| ||||||| |||||||||||||||  |||||||||||||    
T  48569406 ggtgaggtttaacatggaaaagggaagttgtttcccatgatgggaaag 48569453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 32894691 - 32894635
Alignment:
Q  94 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 150  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  32894691 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 32894635  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 49347204 - 49347148
Alignment:
Q  94 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 150  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  49347204 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 49347148  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 6006790 - 6006968
Alignment:
Q  93 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatc 191  Q
    ||||||||||||||| ||||||| |||||||||||||| || |||| |||||||||||| | ||||||||||||| |||||||||   ||||||||||||    
T  6006790 aaccattagattaaaaaggtgcacacattttatgatggtttctccagaccatatatttcacactctcttctccatggtggctcac---ttgtctcggatc 6006886  T
Q  192 taattttctcactcttgttgtgcgaccagatctcaaaacccattaattttttaaaacccattgattcattctgttgtttgatgtcc 277  Q
     | |||||||||||   |||||||||| |||||| |||||||||||||||| |||| |||||| ||| || |||||||| ||||||    
T  6006887 cagttttctcactc---ttgtgcgacctgatctc-aaacccattaatttttgaaaatccattgcttccttatgttgtttaatgtcc 6006968  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 49420084 - 49420198
Alignment:
Q  37 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtc 136  Q
    ||||||||| |  |||||||||| |||||||||  |||||||||||||         |||||||||||||| ||||||| ||||||||||||||  ||||    
T  49420084 ggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttatgatggtctgtc 49420183  T
Q  137 cacaccatatatttc 151  Q
    |||||||||||||||    
T  49420184 cacaccatatatttc 49420198  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 51051296 - 51051174
Alignment:
Q  94 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccatagtggctcacaatttgtctcggatct 192  Q
    |||||||||||||||||||||| ||||||||||||||  ||||  ||||||||||||| | |  ||||||||||  |||||||| | |||||||  |||     
T  51051296 accattagattaaagaggtgcacacattttatgatggtatgtctgcaccatatatttcacaccttcttctccattatggctcac-acttgtctcatatcc 51051198  T
Q  193 aattttctcactcttgttgtgcga 216  Q
      ||||||||||||||||||||||    
T  51051197 tgttttctcactcttgttgtgcga 51051174  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 29647386 - 29647457
Alignment:
Q  97 attagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc-ctctctcttctccata 167  Q
    ||||||||||||||||||| | |||||||||||| || ||||||||||||||||| | ||||||||||||||    
T  29647386 attagattaaagaggtgcacatattttatgatggtttctccacaccatatatttcacactctcttctccata 29647457  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 23593127 - 23593294
Alignment:
Q  49 catgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatat 148  Q
    |||||||| ||||||||||||  |||||||||||||         || |||| ||||||||||| || ||||||||||||||  ||||  ||||||||||    
T  23593127 catgggaatgggaagttgtttcccatgatgggaaagttttttttgactattacattaaagaggtacacacattttatgatggtatgtctgcaccatatat 23593226  T
Q  149 ttc-ctctctcttctccatagtggctcacaatttgtctcggatctaattttctcactcttgttgtgcga 216  Q
    ||| | |||||||||||   ||||||||| | |||||||  |||   ||||||||||||||||||||||    
T  23593227 ttcacactctcttctccgctgtggctcac-acttgtctcatatcctgttttctcactcttgttgtgcga 23593294  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 35840515 - 35840464
Alignment:
Q  100 agattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 151  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatatttc 35840464  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 35840429 - 35840390
Alignment:
Q  212 tgcgaccagatctcaaaacccattaattttttaaaaccca 251  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  35840429 tgcgaccagatctcaaaacccattaatttctcaaaaccca 35840390  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 9145 - 9096
Alignment:
Q  35 aaggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 84  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  9145 aaggtgaggtttagtatgggaaagggaagtagtttttcatgatgggaaag 9096  T

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