View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_74 (Length: 271)

Name: NF6973_low_74
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_74
NF6973_low_74
[»] chr6 (8 HSPs)
chr6 (8-271)||(31113876-31114138)
chr6 (214-271)||(8519055-8519112)
chr6 (214-271)||(34256443-34256500)
chr6 (214-271)||(33301375-33301432)
chr6 (214-271)||(5131573-5131631)
chr6 (214-265)||(8706819-8706870)
chr6 (214-271)||(28144165-28144222)
chr6 (217-271)||(6405896-6405950)
[»] chr4 (10 HSPs)
chr4 (207-271)||(6735992-6736056)
chr4 (218-271)||(13701745-13701798)
chr4 (218-271)||(13712238-13712291)
chr4 (202-271)||(5908263-5908333)
chr4 (214-271)||(2895390-2895447)
chr4 (214-271)||(4851819-4851876)
chr4 (214-271)||(5599030-5599087)
chr4 (214-271)||(1505123-1505181)
chr4 (214-271)||(31666522-31666581)
chr4 (214-265)||(5579362-5579413)
[»] chr1 (8 HSPs)
chr1 (204-271)||(22207073-22207141)
chr1 (214-271)||(15088039-15088096)
chr1 (214-271)||(22210647-22210704)
chr1 (214-271)||(22219397-22219454)
chr1 (204-271)||(14115792-14115860)
chr1 (214-271)||(7898774-7898832)
chr1 (217-271)||(51843726-51843780)
chr1 (214-270)||(44193680-44193736)
[»] scaffold0060 (1 HSPs)
scaffold0060 (207-265)||(45444-45502)
[»] scaffold0158 (2 HSPs)
scaffold0158 (214-271)||(242-299)
scaffold0158 (214-271)||(37699-37756)
[»] chr8 (3 HSPs)
chr8 (214-271)||(5556900-5556957)
chr8 (214-271)||(20811269-20811326)
chr8 (214-271)||(4844672-4844727)
[»] chr7 (7 HSPs)
chr7 (214-271)||(21959459-21959516)
chr7 (214-271)||(19802023-19802080)
chr7 (214-271)||(3079276-3079333)
chr7 (214-271)||(3080635-3080692)
chr7 (214-271)||(48477178-48477235)
chr7 (214-261)||(4340322-4340369)
chr7 (205-271)||(42786748-42786815)
[»] chr5 (1 HSPs)
chr5 (214-271)||(41527655-41527712)
[»] chr3 (9 HSPs)
chr3 (214-271)||(14521897-14521954)
chr3 (214-271)||(2747325-2747382)
chr3 (214-271)||(5835063-5835120)
chr3 (214-271)||(18110868-18110925)
chr3 (214-271)||(19360122-19360179)
chr3 (214-271)||(19440507-19440564)
chr3 (214-271)||(28034117-28034174)
chr3 (214-271)||(37489151-37489208)
chr3 (221-271)||(11418187-11418237)
[»] chr2 (3 HSPs)
chr2 (214-271)||(31314422-31314479)
chr2 (214-271)||(2696696-2696753)
chr2 (214-271)||(31347634-31347693)
[»] scaffold0043 (1 HSPs)
scaffold0043 (214-271)||(70382-70439)
[»] scaffold0018 (1 HSPs)
scaffold0018 (214-266)||(66249-66302)
[»] scaffold0046 (1 HSPs)
scaffold0046 (214-271)||(89619-89676)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 31114138 - 31113876
Alignment:
Q  8 caacgagtgaagccttacatgtacacacaagcgcgctactgtattatttctcctttttcttgaaccttaccatattttcattttttgctgctaacgtacg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  31114138 caacgagtgaagccttacatgtacacacaagcgcgctactgtattatttctcctttttcttgaaccttaccatattttcattttttgctactaacgtagg 31114039  T
Q  108 ttgaaataattttgatgcaagcattagtatttcatatggtataaatacgagctacaccgttgcatttgtttaannnnnnnnnnctttcaaggacaattgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||||    
T  31114038 ttgaaataattttgatgcaagcattagtatttcatatggtataattacgagctacaccgttgcatttgtttaa-tttttttttctttcaaggacaattgt 31113940  T
Q  208 gaaacaccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31113939 gaaacaccctactagaaattacctaggatatctagcatgtgtgttaaacttggcattggataca 31113876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 8519055 - 8519112
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  8519055 ccctactagacattacctaggatatctagcatgcgtgttaaacttggcagtggataca 8519112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 34256500 - 34256443
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  34256500 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggataca 34256443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 33301432 - 33301375
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||    
T  33301432 ccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgttggataca 33301375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 5131631 - 5131573
Alignment:
Q  214 ccctactagaaatt-acctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||    
T  5131631 ccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggataca 5131573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 8706870 - 8706819
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattg 265  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||| |||||    
T  8706870 ccctactagaaatcacctaggatatctagcatgagtgttaaacttgacattg 8706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 28144165 - 28144222
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| |||| ||||||| |||||  ||||||| |||||||||||||||    
T  28144165 ccctactagaaatttcctatgatatctagcatgtatgttaaaattggcattggataca 28144222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 6405896 - 6405950
Alignment:
Q  217 tactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||||| | ||||||    
T  6405896 tactagaaattacataggatatctagcatgtgcgttaaacttggcacttgataca 6405950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 6736056 - 6735992
Alignment:
Q  207 tgaaacaccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  6736056 tgaaacaccctactagaaattacctaggatatctagcatgtgtgttaaatttggcattggataca 6735992  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 13701745 - 13701798
Alignment:
Q  218 actagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  13701745 actagaaatttcctaggatatctagcatgtgtgttaaacttggcattggataca 13701798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 13712238 - 13712291
Alignment:
Q  218 actagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  13712238 actagaaatttcctaggatatctagcatgtgtgttaaacttggcattggataca 13712291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 5908263 - 5908333
Alignment:
Q  202 aattgtgaaacaccct-actagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||| ||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||    
T  5908263 aattttgaaacacccttactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggataca 5908333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 2895447 - 2895390
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||    
T  2895447 ccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggataca 2895390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 4851819 - 4851876
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||    
T  4851819 ccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggataca 4851876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 5599030 - 5599087
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||    
T  5599030 ccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggataca 5599087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 1505123 - 1505181
Alignment:
Q  214 ccctactagaaatt-acctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||| |||||||||||||||    
T  1505123 ccctaatagaaatttacctaggatatctagcatgtgtgttaaatttggcattggataca 1505181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 31666581 - 31666522
Alignment:
Q  214 ccctactagaaattacctaggat--atctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||||||||||||  |||| ||||   |||||||||||||||||||||||    
T  31666581 ccctactagaaattacctaggatttatctagcatttatgttaaacttggcattggataca 31666522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 5579413 - 5579362
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattg 265  Q
    |||||||||||||| |||||||||||| ||||| ||| |||| |||||||||    
T  5579413 ccctactagaaatttcctaggatatctagcatgtgtgctaaatttggcattg 5579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 22207073 - 22207141
Alignment:
Q  204 ttgtgaaacaccc-tactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  22207073 ttgtgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggataca 22207141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 15088039 - 15088096
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15088039 ccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggataca 15088096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 22210647 - 22210704
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  22210647 ccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggataca 22210704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 22219397 - 22219454
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  22219397 ccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggataca 22219454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 14115860 - 14115792
Alignment:
Q  204 ttgtgaaacaccc-tactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||    
T  14115860 ttgtgaaacacccatactagaaatcacctaggatatctagcatgtgtgttaaacttggcatcggataca 14115792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 7898774 - 7898832
Alignment:
Q  214 ccctactagaaatt-acctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||    
T  7898774 ccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggataca 7898832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 51843726 - 51843780
Alignment:
Q  217 tactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||| |||||||||||||||| || || ||||||||||||| ||||||||||    
T  51843726 tactagacattacctaggatatctagcgtgtgtgttaaacttggtattggataca 51843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 44193736 - 44193680
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggatac 270  Q
    |||||||||| ||| |||| ||||||| | | | |||||||||||||||||||||||    
T  44193736 ccctactagacatttcctaagatatctagtacgtgtgttaaacttggcattggatac 44193680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 45502 - 45444
Alignment:
Q  207 tgaaacaccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattg 265  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  45502 tgaaacaccctactagaaattacctaggatatctagcatgtgtgttaaacttgacattg 45444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 299 - 242
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  299 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggataca 242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 37756 - 37699
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  37756 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcagtggataca 37699  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 5556900 - 5556957
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  5556900 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggataca 5556957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 20811326 - 20811269
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||    
T  20811326 ccctactagaatttacgtaggatatctagcatgtgtgttaaacttggcattggataca 20811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 4844727 - 4844672
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| |||||||||||| ||||  ||||||||||||| ||||||||||    
T  4844727 ccctactagaaatttcctaggatatctagcat--gtgttaaacttgggattggataca 4844672  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 21959516 - 21959459
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  21959516 ccctactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggataca 21959459  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19802023 - 19802080
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||||    
T  19802023 ccctactagaaattacctaggatatctagcatgagtgttaaacttgacaatggataca 19802080  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 3079333 - 3079276
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||| ||||||| ||||| |||||||||||| |||||||||||    
T  3079333 ccctactagacattacctatgatatctagcatgtgtgttaaacttgacattggataca 3079276  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 3080635 - 3080692
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| |||||||| ||||||| ||||| |||| |||||||||||||||||||    
T  3080635 ccctactagacattacctatgatatctagcatgtgtgtgaaacttggcattggataca 3080692  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 48477178 - 48477235
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||| | |||||||    
T  48477178 ccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggataca 48477235  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 4340322 - 4340369
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggc 261  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  4340322 ccctactagacattacctaggatatctagcatgtgtgttaaacttggc 4340369  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 42786815 - 42786748
Alignment:
Q  205 tgtgaaacaccc-tactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||| |||||||||| ||||||||||||| ||||  |||||||||||||| | |||||||    
T  42786815 tgtgaaacacccctactagaaatcacctaggatatctagcatttgtgttaaacttggcgtcggataca 42786748  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 41527655 - 41527712
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  41527655 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggataca 41527712  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 14521954 - 14521897
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  14521954 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggataca 14521897  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 2747382 - 2747325
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||    
T  2747382 ccctactagaaattacctaggatatctagaatgtatgttaaacttggcattggataca 2747325  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 5835063 - 5835120
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||    
T  5835063 ccctactataaattacctaggatatctagcatgagtattaaacttggcattggataca 5835120  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 18110868 - 18110925
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||    
T  18110868 ccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggataca 18110925  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 19360179 - 19360122
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||    
T  19360179 ccctactagaaattacatacgatatctagcatgagtgttaaacttggcaatggataca 19360122  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 19440507 - 19440564
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||| |||||||||||||||||||||| || || ||||||||||||||||||| ||||    
T  19440507 ccctgctagaaattacctaggatatctagcgtgtgtgttaaacttggcattgggtaca 19440564  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 28034117 - 28034174
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| || ||||||||| ||||| |||||||| |||||||||||||||    
T  28034117 ccctactagaaatttccaaggatatctagcatgtgtgttaaaattggcattggataca 28034174  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 37489151 - 37489208
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||| || || |||||||||||| ||||| ||||||||||||||||||||||||    
T  37489151 ccctactaaaattttcctaggatatctagcatgtgtgttaaacttggcattggataca 37489208  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 11418187 - 11418237
Alignment:
Q  221 agaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||||||||| ||| | | |||||||||||||||| |||||    
T  11418187 agaaattacctaggatatctagcacgtgcgttaaacttggcattgcataca 11418237  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 31314422 - 31314479
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||    
T  31314422 ccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggataca 31314479  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 2696753 - 2696696
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||| ||||||||||||| | ||| |||||||||||||| | |||||||    
T  2696753 ccctactagaaatcacctaggatatctaggatgtgtgttaaacttggcgtcggataca 2696696  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 31347693 - 31347634
Alignment:
Q  214 ccctactagaaattacctagga--tatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||||||||||  ||||| ||||  |||||||| |||||||||||||||    
T  31347693 ccctactagaaattacctaggatttatctagcatttgtgttaaagttggcattggataca 31347634  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 70439 - 70382
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    |||||||||| ||| |||||||||||| ||||| |||||||||||||||||| |||||    
T  70439 ccctactagacatttcctaggatatctagcatgtgtgttaaacttggcattgaataca 70382  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 66302 - 66249
Alignment:
Q  214 ccctactagaaattacctaggatatctggcat-gcgtgttaaacttggcattgg 266  Q
    |||||||||||||||||||| |||||| |||| | |||||||||||||||||||    
T  66302 ccctactagaaattacctagaatatctagcatggtgtgttaaacttggcattgg 66249  T

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Target: scaffold0046 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 89619 - 89676
Alignment:
Q  214 ccctactagaaattacctaggatatctggcatgcgtgttaaacttggcattggataca 271  Q
    ||||||||||||||  ||||||||||| ||||| | ||||||||||| | ||||||||    
T  89619 ccctactagaaattttctaggatatctagcatgtgcgttaaacttggtactggataca 89676  T

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