View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_75 (Length: 269)
Name: NF6973_low_75
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_75 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 17253 - 17502
Alignment:
| Q |
1 |
gttctaaatttcttgttacaaaattaaatttgaaaacaaaacatgtttgttttaacctcaaaattagtggcaatgcgaaaaaattatactagtacaaata |
100 |
Q |
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| T |
17253 |
gttctaaatttcttgttacaaaattaaatttgaaaacaaaacatgtttgtttcaacctcaaaattagtggcaatgcgaaaaaattatactagtacaaata |
17352 |
T |
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| Q |
101 |
gcctaaaaatttggcagtaattgtattatacctttatgagagaatctagagtccacacacaagtcatatagaatagacaatgactccttcatctttgtta |
200 |
Q |
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| T |
17353 |
gcctaaaaatttggcagtaattgtattatacccttatgagagaatctagagtccacacacaagtcatatagaatagacaatgactccttcatctttgtta |
17452 |
T |
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| Q |
201 |
aatgttacaatccatttctaaaactaaactattacttaatattcttgatg |
250 |
Q |
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| T |
17453 |
aatgttgcaatccatttctaaaactaaactattacttaatattcttgatg |
17502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 42921078 - 42920829
Alignment:
| Q |
1 |
gttctaaatttcttgttacaaaattaaatttgaaaacaaaacatgtttgttttaacctcaaaattagtggcaatgcgaaaaaattatactagtacaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42921078 |
gttctaaatttcttgttacaaaattaaatttgaaaacaaaacatgtttgtttcaacctcaaaattagtggcaatgcgaaaaaattatactagtacaaata |
42920979 |
T |
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| Q |
101 |
gcctaaaaatttggcagtaattgtattatacctttatgagagaatctagagtccacacacaagtcatatagaatagacaatgactccttcatctttgtta |
200 |
Q |
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| T |
42920978 |
gcctaaaaatttggcagtaattgtattatacccttatgagagaatctagagtccacacacaagtcatatagaatagacaatgactccttcatctttgtta |
42920879 |
T |
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| Q |
201 |
aatgttacaatccatttctaaaactaaactattacttaatattcttgatg |
250 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42920878 |
aatgttgcaatccatttctaaaactaaactattacttaatattcttgatg |
42920829 |
T |
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