View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_78 (Length: 266)
Name: NF6973_low_78
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 36938384 - 36938549
Alignment:
| Q |
1 |
tttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaa |
100 |
Q |
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| T |
36938384 |
tttgtcaatacatgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaa |
36938483 |
T |
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| Q |
101 |
gaggatatgatgttgatattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
166 |
Q |
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| T |
36938484 |
gaggatatgatgttgatattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
36938549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 36948640 - 36948793
Alignment:
| Q |
13 |
tgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatg |
112 |
Q |
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| T |
36948640 |
tgggatcctaaatatgatcatgttgggattgatgttaattctatcagcactaatcacactacacaatggttcactagcatggatgaaagaggatatgatg |
36948739 |
T |
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| Q |
113 |
ttgatattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
166 |
Q |
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| T |
36948740 |
ctgaagtgagttatgattcaagttcaaacaatttaactgtcacattcacaggtt |
36948793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 36958773 - 36958927
Alignment:
| Q |
12 |
atgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgat |
111 |
Q |
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| T |
36958773 |
atgggatcctaactatgatcatgttgggattgatgttaattctatcagcactaatcacgctacacaatggttcactagcatggatgaaagaggatatgat |
36958872 |
T |
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| Q |
112 |
gttgatattagttacaattctagttcaaacaatttaagtgtcaccttcacaggtt |
166 |
Q |
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| T |
36958873 |
gctgaagtcagttacgattcaagttcaaacaatttaactgtcacatttacaggtt |
36958927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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