View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_80 (Length: 256)
Name: NF6973_low_80
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 3016868 - 3017085
Alignment:
| Q |
22 |
acattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcannnnnnnncaggaggtcttgagattaattgta |
121 |
Q |
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| T |
3016868 |
acattaattgaattctattctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcattttctttcaggaggtcttgagattaattgta |
3016967 |
T |
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| Q |
122 |
tcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaatgc |
221 |
Q |
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| T |
3016968 |
tcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagttgcaaaagtcaggttatgtgtggtaatgc |
3017067 |
T |
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| Q |
222 |
tggatcttgaatgtgatg |
239 |
Q |
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| T |
3017068 |
tggatcttgaatgtgatg |
3017085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 3032620 - 3032821
Alignment:
| Q |
38 |
attctattatcatgttcttaacaagttatgtctgttgagttatatggtgtcannnnnnnncaggaggtcttgagattaattgtatcttcttttgaaaatc |
137 |
Q |
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| T |
3032620 |
attctattatcatgctcttaacatattacatctgttgagttttatgttgtcattttctttcaggaggtctttaggttaattgtatcttcatttgaaaatc |
3032719 |
T |
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| Q |
138 |
tacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaatgctggatcttgaatgtga |
237 |
Q |
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| T |
3032720 |
tacatgataagtcaagccgatggtactcaaagaggactttaatcctcgaaacagttgcaaaagtcaggtcatgtgtggtaatgctggatcttgaatgcga |
3032819 |
T |
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| Q |
238 |
tg |
239 |
Q |
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|| |
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| T |
3032820 |
tg |
3032821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 48970027 - 48969900
Alignment:
| Q |
112 |
attaattgtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgt |
211 |
Q |
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||||||||||||||| ||||||||||||||||||| || |||||| | |||||| | |||| | |||| ||||| || ||||| ||||| | |||| |
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| T |
48970027 |
attaattgtatcttcatttgaaaatctacatgataagttaagccgatcgtatgagaataggagaatagtcctcgaaactgttgcaaaggtcagatcatgt |
48969928 |
T |
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| Q |
212 |
gtggtaatgctggatcttgaatgtgatg |
239 |
Q |
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| T |
48969927 |
gtggtaatgttggaccttgattgtgatg |
48969900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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