View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_83 (Length: 246)
Name: NF6973_low_83
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36892906 - 36892675
Alignment:
| Q |
1 |
cctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgc |
100 |
Q |
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| T |
36892906 |
cctcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgc |
36892807 |
T |
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| Q |
101 |
aacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttgct |
200 |
Q |
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| T |
36892806 |
aacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgct |
36892707 |
T |
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| Q |
201 |
gcaaccaaaaatggtgtcatctttttcttgat |
232 |
Q |
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| T |
36892706 |
gcaaccaaaaatggtgtcatctttttcttgat |
36892675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 36881818 - 36881599
Alignment:
| Q |
5 |
atccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctca------aggtctcaacaataagaggttgcctgtatttgact |
98 |
Q |
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| T |
36881818 |
atccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggttgtcttgacttcact |
36881719 |
T |
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| Q |
99 |
gcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttg |
198 |
Q |
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| T |
36881718 |
gcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaactattccatttttcg |
36881619 |
T |
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| Q |
199 |
ctgcaaccaaaaatggtgtc |
218 |
Q |
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| T |
36881618 |
ctgcaaccaaaaatggtgtc |
36881599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
86 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
185 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
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| Q |
186 |
attccattttttgctgcaaccaaaaatggtg |
216 |
Q |
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| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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