View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_86 (Length: 240)
Name: NF6973_low_86
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27936698 - 27936928
Alignment:
| Q |
1 |
atcatcgcatgaagatggacgtagagnnnnnnnntgcaagtccatagaaaagcttgagtatttgccggatatgaatgattctgttgattctgctactact |
100 |
Q |
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| T |
27936698 |
atcatcgcatgaagatggacgtagagaaaaaaaatgcaagtccatagaaaagcttgagtatttgccggatatgaatgattctgttgattctgctactact |
27936797 |
T |
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| Q |
101 |
ctcaatttgcctgttaaaaaagaatcatcgtattggatgtccatagaaaatattcggcatttactacaaaaatggcatttgtatcatgtttcggatgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27936798 |
ctcaatttgcctgttaaaaaagaatcatcgtattggatgtccatagaaaatattcggcatttactacaaaaatggcatttgtatcatgtttcggatgcag |
27936897 |
T |
|
| Q |
201 |
tacataacaaggtcattgatgatgatgatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27936898 |
tacataacaaggtcattgatgatgatgatgt |
27936928 |
T |
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