View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6973_low_88 (Length: 237)
Name: NF6973_low_88
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 455195 - 455412
Alignment:
| Q |
1 |
tgtttatttttgttgggatattttgcagcattacgttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
455195 |
tgtttatttttgttgggatattttgcagcattactttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgat |
455294 |
T |
|
| Q |
101 |
caatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatcttactaaactcaacttaattacttttgttgagtttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
455295 |
caatcttactccagcagtcacatttgttatagcaacctttgttgggtaattatatactaatcttactaaactcaac----ttacttttgttgagtttgaa |
455390 |
T |
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| Q |
201 |
tcatttttattgaatatattac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
455391 |
tcatttttattgaatatattac |
455412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 446507 - 446609
Alignment:
| Q |
39 |
tatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacct |
138 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| |||||||| ||||||| |||||||||| |||||| ||| |
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| T |
446507 |
tatcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcct |
446606 |
T |
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| Q |
139 |
ttg |
141 |
Q |
| |
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||| |
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| T |
446607 |
ttg |
446609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 474543 - 474636
Alignment:
| Q |
41 |
tcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagca |
134 |
Q |
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| T |
474543 |
tcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcagtcacatttgttatagca |
474636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 467485 - 467626
Alignment:
| Q |
11 |
tgttgggatattttgcagcattacgttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttact |
110 |
Q |
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||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||| ||||||| | |
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| T |
467485 |
tgttgggatatattgcagcattacattgaatcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaatcttctt |
467584 |
T |
|
| Q |
111 |
ccagcagtcacatttgttatagcaacctttgttgggtaatta |
152 |
Q |
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| T |
467585 |
ccggcagtcacatttgtaattgcagccttagtagggtaatta |
467626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 479856 - 479990
Alignment:
| Q |
18 |
atattttgcagcattacgttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcag |
117 |
Q |
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|||| |||||||||||| || |||||||||||| |||||||||| ||| |||| | ||| ||||| ||||| ||||||| ||| ||| |||||||| |
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| T |
479856 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcag |
479955 |
T |
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| Q |
118 |
tcacatttgttatagcaacctttgttgggtaatta |
152 |
Q |
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|||||||||| |||||| ||||||| ||||||||| |
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| T |
479956 |
tcacatttgtaatagcagcctttgtagggtaatta |
479990 |
T |
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