View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6973_low_9 (Length: 712)
Name: NF6973_low_9
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6973_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 4 - 696
Target Start/End: Original strand, 42517633 - 42518332
Alignment:
| Q |
4 |
gaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaaacccatca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42517633 |
gaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaaacccatca |
42517732 |
T |
|
| Q |
104 |
catacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaatggccacggctac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42517733 |
catacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaatggccacggctac |
42517832 |
T |
|
| Q |
204 |
aatgatctgtcccaaaattaataaatttatattagcaacaaaatataagtactgtttaaa-------------ata----ttgtaatgtgttatttgcct |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||| | | |
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| T |
42517833 |
aatgatctgtcccaaaattaataaatttgtattagcaacacaatataagtactgtttaaagactataaaaattatacgaattgtaatgtgttattttctt |
42517932 |
T |
|
| Q |
287 |
aaccacctacgctagcgcaaatcattagtctacattatgtgtgttgtgaatttcaaagttcatatgataatt-gatatgaacaaataaaatttagacaac |
385 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
42517933 |
aaccaccgacgctagcgcaaatcatta----------tgtgtgttgtgaatttcaaagttcatatgataatttgatatgaacaaataaaatt-agacaac |
42518021 |
T |
|
| Q |
386 |
aattaaaggagttatttaatcaatgtacctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42518022 |
aattaaaggagttatttaatcaatgtacctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaat |
42518121 |
T |
|
| Q |
486 |
tgaagcaaacgttgctaatgcattgcagcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagca |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42518122 |
tgaagcaaacgttgctaatgcattgcagcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagca |
42518221 |
T |
|
| Q |
586 |
taaaatgtgatgacattcatgccagtgagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaaatagacc |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42518222 |
taaaatgtgatgacattcatgccagtgagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaaatagacc |
42518321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 393 - 696
Target Start/End: Original strand, 1239708 - 1240010
Alignment:
| Q |
393 |
ggagttatttaatcaatgtacctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaagca |
492 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| || |
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|
| T |
1239708 |
ggagttatttaatcaatgtacctggcagataaacatttgagctcctccttgtaagaacagagtacgtctcccaaacttatcaacggtggcaattgaaaca |
1239807 |
T |
|
| Q |
493 |
aacgttgctaatgcattgcagcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagcataaaatg |
592 |
Q |
| |
|
| ||| ||||| ||||| | || ||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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|
| T |
1239808 |
agcgtagctaa-gcattaaaaccaccggttatcatggcagacatgagggaagcattagcaccaaaacctatagttttaaacaaaactggagcataaaatg |
1239906 |
T |
|
| Q |
593 |
tgatgacattcatgccagtgagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaaatagaccaagggtg |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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|
| T |
1239907 |
tgatgacattcatgccagtgagttgctggaataatggaatagctatggccatggtaagttgaggcctatactgcctcgtcaacaaacaagcccaagggta |
1240006 |
T |
|
| Q |
693 |
tttg |
696 |
Q |
| |
|
|||| |
|
|
| T |
1240007 |
tttg |
1240010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1239011 - 1239223
Alignment:
| Q |
1 |
accgaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaaaccca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
1239011 |
accgaaacattgacactttgagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcgaatccca |
1239110 |
T |
|
| Q |
101 |
tcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaatggccacggc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| || |||| | || |
|
|
| T |
1239111 |
tcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcgcctggatttccatcaactccaaatttagattgaacggccgctgc |
1239210 |
T |
|
| Q |
201 |
tacaatgatctgt |
213 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
1239211 |
tacaataatctgt |
1239223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 412 - 678
Target Start/End: Complemental strand, 42552007 - 42551741
Alignment:
| Q |
412 |
acctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaagcaaacgttgctaatgcattgc |
511 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | ||| ||||| | ||| ||||| ||||||||||| ||||||||| ||| || || | |||||| | |
|
|
| T |
42552007 |
acctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgcattac |
42551908 |
T |
|
| Q |
512 |
agcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagt |
611 |
Q |
| |
|
| ||||| | || | |||||||| || |||||| | || ||| || ||||| ||||||||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
42551907 |
aacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacaggggcataaaatgtaatcacattcatgccagt |
42551808 |
T |
|
| Q |
612 |
gagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaa |
678 |
Q |
| |
|
||||||||||||||| ||||| ||| | ||||| || || ||||| ||||| || ||| |||||||| |
|
|
| T |
42551807 |
gagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaa |
42551741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 42552273 - 42552215
Alignment:
| Q |
37 |
tcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
95 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
42552273 |
tcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaa |
42552215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 41971517 - 41971730
Alignment:
| Q |
1 |
accgaaacattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaaaccca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
41971517 |
accgaaacattgacactttgagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggaccccaagaccatgtgaatccca |
41971616 |
T |
|
| Q |
101 |
tcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaat-ggccacgg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||| | |
|
|
| T |
41971617 |
tcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatgggccactg |
41971716 |
T |
|
| Q |
200 |
ctacaatgatctgt |
213 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
41971717 |
ctacaataatctgt |
41971730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 412 - 678
Target Start/End: Original strand, 18234202 - 18234468
Alignment:
| Q |
412 |
acctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaagcaaacgttgctaatgcattgc |
511 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||| ||||| | ||| ||||| |||||||||||||| ||||| | || || || | ||| || | |
|
|
| T |
18234202 |
acctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgatacgaaagtggcaagtgcgttac |
18234301 |
T |
|
| Q |
512 |
agcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagt |
611 |
Q |
| |
|
| |||||||| |||| ||||||||| || ||||| || | ||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| || |
|
|
| T |
18234302 |
atcctccggtaatcagggctgacatgagagaagcgttgctgctaaacccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgccggt |
18234401 |
T |
|
| Q |
612 |
gagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaa |
678 |
Q |
| |
|
||||||||| ||||| ||||| ||| | ||||| || || ||||| |||||| | |||||||||||| |
|
|
| T |
18234402 |
gagttgctgaaagaacggaatggctattgccattgtgagatgaggtctatacggtctcgtcaacaaa |
18234468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 18233910 - 18233998
Alignment:
| Q |
7 |
acattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
95 |
Q |
| |
|
||||||| ||||||||| || || || || || |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
18233910 |
acattgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaa |
18233998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 21403577 - 21403461
Alignment:
| Q |
103 |
acatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaatggccacggcta |
202 |
Q |
| |
|
|||||||| ||||||||| |||||||| || | |||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||| | |||| |
|
|
| T |
21403577 |
acatacacatatatgcctaccacaacaatca-tacataccactttgacagctcacctggatttccatcaacaccaaatttagatgcaatggctgctgcta |
21403479 |
T |
|
| Q |
203 |
caatgatctgtcccaaaa |
220 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
21403478 |
caataatctgtgccaaaa |
21403461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 35922257 - 35922432
Alignment:
| Q |
7 |
acattgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaaacccatcacat |
106 |
Q |
| |
|
||||||||||||||||| || ||||| | ||| | ||| || || ||||||| ||||||||| |||||||||||||| ||||| | ||| | |||| |
|
|
| T |
35922257 |
acattgacactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgaccaagaaaatgctgctacat |
35922356 |
T |
|
| Q |
107 |
acacgcatatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaattt |
182 |
Q |
| |
|
| |||| ||| || ||| |||| | ||||||||||||||| | ||||||||| || ||||||| ||||||||| |
|
|
| T |
35922357 |
aagcgcaaatgaatagcaccacaacaattgcataccactttggtaactcaccagggtttccatcaattccaaattt |
35922432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 36202784 - 36202702
Alignment:
| Q |
13 |
acactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
95 |
Q |
| |
|
|||||||||||||| || || | ||| | ||||||||| ||||| || |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
36202784 |
acactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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