View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6973_low_94 (Length: 210)

Name: NF6973_low_94
Description: NF6973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6973_low_94
NF6973_low_94
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-57)||(5927-5983)
[»] chr7 (11 HSPs)
chr7 (1-57)||(2935070-2935126)
chr7 (1-57)||(9027631-9027687)
chr7 (1-57)||(22107867-22107923)
chr7 (1-57)||(22136878-22136934)
chr7 (1-57)||(40549627-40549683)
chr7 (1-57)||(40551905-40551961)
chr7 (3-57)||(1047449-1047503)
chr7 (3-57)||(3878322-3878376)
chr7 (3-57)||(26804345-26804399)
chr7 (12-57)||(40837216-40837261)
chr7 (5-58)||(27306716-27306768)
[»] chr6 (9 HSPs)
chr6 (1-57)||(29755223-29755279)
chr6 (1-57)||(33308685-33308741)
chr6 (1-57)||(33310954-33311010)
chr6 (8-57)||(26068833-26068882)
chr6 (3-57)||(14507662-14507716)
chr6 (8-57)||(26066562-26066611)
chr6 (12-58)||(4816740-4816787)
chr6 (3-53)||(11983512-11983562)
chr6 (4-60)||(15530608-15530664)
[»] chr5 (21 HSPs)
chr5 (1-57)||(10749505-10749561)
chr5 (1-57)||(38960548-38960604)
chr5 (1-58)||(23664833-23664890)
chr5 (1-58)||(23793697-23793754)
chr5 (1-57)||(10756960-10757016)
chr5 (1-57)||(15355009-15355065)
chr5 (1-57)||(15357285-15357341)
chr5 (1-57)||(23667109-23667165)
chr5 (3-57)||(21684915-21684969)
chr5 (3-57)||(34479918-34479972)
chr5 (3-57)||(39797849-39797903)
chr5 (12-58)||(25921947-25921993)
chr5 (3-57)||(31544798-31544852)
chr5 (3-57)||(34477578-34477632)
chr5 (12-57)||(2174680-2174725)
chr5 (12-57)||(31179888-31179933)
chr5 (3-59)||(18186533-18186589)
chr5 (3-57)||(31542442-31542496)
chr5 (3-53)||(4236374-4236424)
chr5 (3-57)||(36402791-36402845)
chr5 (32-62)||(29043963-29043993)
[»] chr2 (10 HSPs)
chr2 (1-57)||(36559302-36559358)
chr2 (1-57)||(36561621-36561677)
chr2 (1-57)||(45332619-45332675)
chr2 (146-210)||(11441829-11441893)
chr2 (3-57)||(43624031-43624085)
chr2 (12-57)||(19502505-19502550)
chr2 (14-57)||(24162709-24162752)
chr2 (12-53)||(27104519-27104560)
chr2 (3-57)||(40032532-40032586)
chr2 (12-58)||(19504839-19504885)
[»] scaffold0140 (2 HSPs)
scaffold0140 (1-57)||(21915-21971)
scaffold0140 (1-57)||(24190-24246)
[»] chr4 (23 HSPs)
chr4 (3-59)||(16934660-16934716)
chr4 (3-57)||(16932306-16932360)
chr4 (146-210)||(47656504-47656568)
chr4 (3-57)||(7941133-7941187)
chr4 (9-57)||(9176987-9177035)
chr4 (143-206)||(54922957-54923019)
chr4 (3-57)||(3825058-3825112)
chr4 (3-57)||(11434769-11434823)
chr4 (3-59)||(22783263-22783319)
chr4 (3-57)||(5637952-5638006)
chr4 (7-57)||(9174635-9174684)
chr4 (3-57)||(22780898-22780952)
chr4 (3-57)||(36920072-36920125)
chr4 (3-60)||(36921980-36922036)
chr4 (3-57)||(38408993-38409047)
chr4 (12-53)||(37089869-37089910)
chr4 (15-55)||(51015042-51015082)
chr4 (3-57)||(11006726-11006781)
chr4 (7-53)||(24888594-24888640)
chr4 (12-57)||(8528918-8528963)
chr4 (32-60)||(619961-619989)
chr4 (12-57)||(18846923-18846970)
chr4 (143-207)||(50236553-50236616)
[»] chr1 (14 HSPs)
chr1 (1-57)||(23783238-23783294)
chr1 (3-57)||(47179428-47179482)
chr1 (3-57)||(6822775-6822829)
chr1 (3-57)||(13761577-13761631)
chr1 (3-57)||(47177078-47177132)
chr1 (3-53)||(16225891-16225941)
chr1 (3-57)||(51752104-51752158)
chr1 (73-113)||(10551836-10551876)
chr1 (3-57)||(10400315-10400369)
chr1 (12-58)||(20291279-20291325)
chr1 (3-57)||(51749778-51749832)
chr1 (15-57)||(20302198-20302240)
chr1 (3-58)||(15823285-15823340)
chr1 (25-53)||(16228240-16228268)
[»] chr8 (6 HSPs)
chr8 (3-57)||(18810483-18810537)
chr8 (3-57)||(18812668-18812722)
chr8 (8-57)||(43079347-43079396)
chr8 (8-57)||(43081722-43081771)
chr8 (15-53)||(14807552-14807590)
chr8 (15-57)||(44720617-44720660)
[»] chr3 (16 HSPs)
chr3 (3-57)||(38210067-38210121)
chr3 (3-57)||(18097368-18097422)
chr3 (3-57)||(18099653-18099707)
chr3 (12-59)||(3859315-3859362)
chr3 (3-58)||(50493675-50493730)
chr3 (3-57)||(7606909-7606963)
chr3 (3-57)||(53896700-53896754)
chr3 (12-57)||(25388618-25388663)
chr3 (3-57)||(22114788-22114842)
chr3 (3-57)||(35777163-35777217)
chr3 (3-56)||(5191374-5191427)
chr3 (12-57)||(6066246-6066291)
chr3 (12-57)||(6063961-6064006)
chr3 (12-57)||(6719606-6719651)
chr3 (4-58)||(32264527-32264581)
chr3 (12-57)||(5885983-5886028)
[»] scaffold0068 (1 HSPs)
scaffold0068 (3-57)||(28941-28995)
[»] scaffold0127 (1 HSPs)
scaffold0127 (12-57)||(13009-13054)
[»] scaffold0025 (2 HSPs)
scaffold0025 (7-53)||(69783-69829)
scaffold0025 (7-53)||(73494-73540)
[»] scaffold0131 (1 HSPs)
scaffold0131 (12-56)||(14768-14813)


Alignment Details
Target: scaffold0472 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5983 - 5927
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5983 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 5927  T

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Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2935126 - 2935070
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2935126 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9027631 - 9027687
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9027631 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22107923 - 22107867
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22107923 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22107867  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22136934 - 22136878
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22136934 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 22136878  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40549683 - 40549627
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40549683 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40549627  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40551961 - 40551905
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40551961 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 40551905  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1047449 - 1047503
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1047449 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 1047503  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 3878376 - 3878322
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  3878376 gcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26804399 - 26804345
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  26804399 gcccagccatcgtgccacgattctgtagaaacctgattttaagttaactctcaca 26804345  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 40837216 - 40837261
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  40837216 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 40837261  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 27306716 - 27306768
Alignment:
Q  5 ccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    |||||| ||||||||||||| |||| |||||| |||||||||||||||||||||    
T  27306716 ccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcacat 27306768  T

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Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29755223 - 29755279
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29755223 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33308741 - 33308685
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33308741 aagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33308685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33311010 - 33310954
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33311010 aagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 33310954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 26068833 - 26068882
Alignment:
Q  8 gccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26068833 gccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 14507662 - 14507716
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  14507662 gcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 26066562 - 26066611
Alignment:
Q  8 gccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  26066562 gccgtcgtgccacgattctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 4816740 - 4816787
Alignment:
Q  12 tcgtgccacgattgtgcagaaa-cctgattttaagttaactctcacat 58  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  4816740 tcgtgccacgattctgcagaaaacctgattttaagttaactctcacat 4816787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 11983512 - 11983562
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    ||||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  11983512 gcccaaccatcgtaccacgattctgcagaaacctgattttaagttaactct 11983562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 15530608 - 15530664
Alignment:
Q  4 cccagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcacatta 60  Q
    ||||||| |||||||||||||  ||||||  |||||||||||||||||||||||||||    
T  15530608 cccagccatcgtgccacgattcctgcagat-cctgattttaagttaactctcacatta 15530664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10749561 - 10749505
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10749561 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38960548 - 38960604
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38960548 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 38960604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23664890 - 23664833
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23664890 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23793697 - 23793754
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23793697 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 23793754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10757016 - 10756960
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10757016 aagcccagccgtcgtgctacgattgtgcagaaacctgattttaagttaactctcaca 10756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15355009 - 15355065
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15355009 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15357285 - 15357341
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15357285 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 15357341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23667165 - 23667109
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23667165 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23667109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 21684915 - 21684969
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  21684915 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34479918 - 34479972
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  34479918 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 39797903 - 39797849
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  39797903 gcccagccatcgtgccacgattatgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 25921947 - 25921993
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25921947 tcgtgccacgattctgcagaaacctgattttaagttaactctcacat 25921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 31544852 - 31544798
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31544852 gcccagctatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34477578 - 34477632
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  34477578 gcccagccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 2174725 - 2174680
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2174725 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 31179888 - 31179933
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31179888 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 31179933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 18186533 - 18186589
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacatt 59  Q
    |||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  18186533 gcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcacatt 18186589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 31542496 - 31542442
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  31542496 gcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 4236424 - 4236374
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||||    
T  4236424 gcccagccatcgtgccacaattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 36402791 - 36402845
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| |||||||  |||| ||||||||||| ||||||||||||||||||||    
T  36402791 gcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 29043993 - 29043963
Alignment:
Q  32 aacctgattttaagttaactctcacattaat 62  Q
    |||||||||||||||||||||||||||||||    
T  29043993 aacctgattttaagttaactctcacattaat 29043963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36559302 - 36559358
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36559302 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36561621 - 36561677
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561621 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45332619 - 45332675
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45332619 aagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 11441829 - 11441893
Alignment:
Q  146 cacgaacaagccttcaacacatttgtgcgtacacgtctcttggccagcaccttcataaaagccgc 210  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  11441829 cacgaacaagctttcaacacatctgtgtttacacgtctcttggccagcaccttcataaaagccgc 11441893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 43624031 - 43624085
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||| |||||    
T  43624031 gcccagccatcgtgccatgattctgcagaaacctgattttaagttaactttcaca 43624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 19502505 - 19502550
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||    
T  19502505 tcgtgccacgattctgcagaaacctgattttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 24162709 - 24162752
Alignment:
Q  14 gtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  24162709 gtgccacgattctgcagaaacttgattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 27104560 - 27104519
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  27104560 tcgtgccacgattctgcagaaatctgattttaagttaactct 27104519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 40032532 - 40032586
Alignment:
Q  3 gcccagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| |||||||||||||  ||||||| ||||||||||||||||||||||||    
T  40032532 gcccagccatcgtgccacgatttctgcagaa-cctgattttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 19504839 - 19504885
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    |||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  19504839 tcgtgccatgattctgctgaaacctgattttaagttaactttcacat 19504885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21971 - 21915
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21971 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 21915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24246 - 24190
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24246 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 24190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 16934660 - 16934716
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacatt 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16934660 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacatt 16934716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 16932306 - 16932360
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16932306 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 47656568 - 47656504
Alignment:
Q  146 cacgaacaagccttcaacacatttgtgcgtacacgtctcttggccagcaccttcataaaagccgc 210  Q
    ||||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  47656568 cacgaacaagctttcaacacatctgtgcttacacgtctcttgaccagcaccttcataaaagccgc 47656504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7941187 - 7941133
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7941187 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 9176987 - 9177035
Alignment:
Q  9 ccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9176987 ccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 54923019 - 54922957
Alignment:
Q  143 ccgcacgaacaagccttcaacacatttgtgcgtacacgtctcttggccagcaccttcataaaag 206  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  54923019 ccgcacgaacaagc-ttcaacacatctgtgcgtacacgtctcttggctagcaccgtcataaaag 54922957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 3825058 - 3825112
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  3825058 gcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 3825112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 11434823 - 11434769
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  11434823 gcccagccatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 22783263 - 22783319
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacatt 59  Q
    |||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  22783263 gcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcacatt 22783319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 5637952 - 5638006
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  5637952 gcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 9174635 - 9174684
Alignment:
Q  7 agccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  9174635 agccgtcgtgccacgattctgcagaa-cctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 22780898 - 22780952
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  |||| |||||||| ||||||||||||||||||||||||||||||||    
T  22780898 gcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 36920072 - 36920125
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  36920072 gcccagccatcgtgccacgattttgcagaa-cctgattttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 36921980 - 36922036
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacatta 60  Q
    |||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  36921980 gcccagccatcgtaccacgattttgcagaa-cctgattttaagttaactctcacatta 36922036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 38409047 - 38408993
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  ||||||||||||| |||||||| || ||||||||||||||||||||    
T  38409047 gcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 37089869 - 37089910
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  37089869 tcgtgccacgattctgcagaaatctgattttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 51015082 - 51015042
Alignment:
Q  15 tgccacgattgtgcagaaacctgattttaagttaactctca 55  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  51015082 tgccacgattctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 11006726 - 11006781
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaa-cctgattttaagttaactctcaca 57  Q
    |||||||  ||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  11006726 gcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 24888640 - 24888594
Alignment:
Q  7 agccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    |||| ||||||||| ||| |||||||| |||||||||||||||||||    
T  24888640 agccatcgtgccacaattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 8528963 - 8528918
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||| ||||||| | |||||| |||||||||||||||||||||||    
T  8528963 tcgtgacacgattctccagaaatctgattttaagttaactctcaca 8528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 619961 - 619989
Alignment:
Q  32 aacctgattttaagttaactctcacatta 60  Q
    |||||||||||||||||||||||||||||    
T  619961 aacctgattttaagttaactctcacatta 619989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18846970 - 18846923
Alignment:
Q  12 tcgtgccacgattgtgcagaaac--ctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||   |||||||||||||||||||||||    
T  18846970 tcgtgccacgattctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 50236616 - 50236553
Alignment:
Q  143 ccgcacgaacaagccttcaacacatttgtgcgtacacgtctcttggccagcaccttcataaaagc 207  Q
    ||||| |||||||| |||||||| ||||||| |||||||||||||| | ||||| ||||| ||||    
T  50236616 ccgcatgaacaagc-ttcaacacgtttgtgcatacacgtctcttggtcggcaccgtcatacaagc 50236553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23783294 - 23783238
Alignment:
Q  1 aagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23783294 aagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 47179482 - 47179428
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47179482 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 6822829 - 6822775
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6822829 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 13761631 - 13761577
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  13761631 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 47177132 - 47177078
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47177132 gcccagtcgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 16225941 - 16225891
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  16225941 gcccaaccgtcgtgccacgattctgcagaaacctgattttaagttaactct 16225891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 51752158 - 51752104
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  51752158 gcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 10551876 - 10551836
Alignment:
Q  73 atagtagttcaaattagaacatattcatagcattaatgaat 113  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10551876 atagtagttcaaattagaacatattcatagcattaatgaat 10551836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 10400315 - 10400369
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  10400315 gcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 20291325 - 20291279
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  20291325 tcgtgccacgattctgcagaaatctgattttaagttaactctcacat 20291279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 51749832 - 51749778
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  51749832 gcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 20302240 - 20302198
Alignment:
Q  15 tgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||| ||||| |||||||| |||||||||||||||||||||||    
T  20302240 tgccgcgattctgcagaaatctgattttaagttaactctcaca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 15823340 - 15823285
Alignment:
Q  3 gcccagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcacat 58  Q
    |||||||| |||||||||||||  ||||||  |||||||||||||||||||||||||    
T  15823340 gcccagccatcgtgccacgattcctgcagat-cctgattttaagttaactctcacat 15823285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 16228268 - 16228240
Alignment:
Q  25 gtgcagaaacctgattttaagttaactct 53  Q
    |||||||||||||||||||||||||||||    
T  16228268 gtgcagaaacctgattttaagttaactct 16228240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 18810537 - 18810483
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18810537 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 18812722 - 18812668
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  18812722 gcccagccgtcgtgccacgattcttcagaaacctgattttaagttaactctcaca 18812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 43079396 - 43079347
Alignment:
Q  8 gccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43079396 gccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43079347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 43081771 - 43081722
Alignment:
Q  8 gccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43081771 gccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 43081722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 14807590 - 14807552
Alignment:
Q  15 tgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  14807590 tgccacgattctgcagaaacctgattttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 44720660 - 44720617
Alignment:
Q  15 tgccacgattgtgcagaaa-cctgattttaagttaactctcaca 57  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  44720660 tgccacgattctgcagaaaacctgattttaagttaactctcaca 44720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 38210121 - 38210067
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38210121 gcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 18097368 - 18097422
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18097368 gcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 18099653 - 18099707
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18099653 gcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3859362 - 3859315
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcacatt 59  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3859362 tcgtgccacgattatgcagaaacctgattttaagttaactctcacatt 3859315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 50493730 - 50493675
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacat 58  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  50493730 gcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacat 50493675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 7606909 - 7606963
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7606909 gcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 53896700 - 53896754
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  53896700 gcccagcaatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 25388663 - 25388618
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  25388663 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 25388618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 22114788 - 22114842
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||| || ||||||||||||| | ||||||||||||||||||||||||||||||    
T  22114788 gcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 35777217 - 35777163
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  35777217 gcccagctgtcgtgccacgattctgcagaaatctaattttaagttaactctcaca 35777163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 5191427 - 5191374
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcac 56  Q
    |||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  5191427 gcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 6066246 - 6066291
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  6066246 tcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 6063961 - 6064006
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| |||| ||||||||||||||||||| |||||||    
T  6063961 tcgtgccacgattctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 6719606 - 6719651
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||    
T  6719606 tcgtgccacgattaagcagaaacctgattttaagttaattctcaca 6719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 32264527 - 32264581
Alignment:
Q  4 cccagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcacat 58  Q
    ||||||| |||||||||||||  |||| ||||||||||||||||||||||||||||    
T  32264527 cccagccatcgtgccacgatttctgca-aaacctgattttaagttaactctcacat 32264581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 5886028 - 5885983
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| || | |||||| ||||||||||||||||||||    
T  5886028 tcgtgccacgattctgtaaaaacctaattttaagttaactctcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 28995 - 28941
Alignment:
Q  3 gcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  28995 gcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0127 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 13009 - 13054
Alignment:
Q  12 tcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  13009 tcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 69783 - 69829
Alignment:
Q  7 agccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||    
T  69783 agccatcgtgccacgattctgcagaaatctgattttaagttaactct 69829  T

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Target: scaffold0025; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 73494 - 73540
Alignment:
Q  7 agccgtcgtgccacgattgtgcagaaacctgattttaagttaactct 53  Q
    |||| ||||||||||||| |||| ||| |||||||||||||||||||    
T  73494 agccatcgtgccacgattctgcataaatctgattttaagttaactct 73540  T

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Target: scaffold0131 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 14813 - 14768
Alignment:
Q  12 tcgtgccacgattg-tgcagaaacctgattttaagttaactctcac 56  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  14813 tcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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