View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6974_high_4 (Length: 242)
Name: NF6974_high_4
Description: NF6974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6974_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45909308 - 45909529
Alignment:
| Q |
1 |
attgtaaaaaagtccataagttaaagaaccaacaaccaagacccagtcatcaattcaatagaccaaattggtttattcgtttaattaatcctcaaattac |
100 |
Q |
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| T |
45909308 |
attgtaaaaaagtccataagttaaagaacctacaaccaagacccagtaatcaattcaatagaccacattggttttatcgtttaatcaatcctcaaattac |
45909407 |
T |
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| Q |
101 |
acatcctaatagatatgaatgtcaaaaaatctctgtgcttacctccccaactattaaaagtccagtcgattccgccaatcctatgctccacatcatcaga |
200 |
Q |
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| T |
45909408 |
acatcctaatagatatgaatgtcaaaaaatctc--tgcttacctccccaactattaaaagtccagtcgattccggcaatcctatgctccacatcatcaga |
45909505 |
T |
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| Q |
201 |
ttccgacacttctctcctcgcaac |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
45909506 |
ttccgacacttctctcctcacaac |
45909529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 45915875 - 45916052
Alignment:
| Q |
24 |
aagaaccaacaaccaagacccagtcatcaattcaatagaccaaattggtttattcgtttaattaatcctcaaattacacatcctaatagatatgaatgtc |
123 |
Q |
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||||||||||||||||||| | | ||||||||||| | || |||||||| ||| ||||||| || ||||||| || || ||| | || ||||| | |
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| T |
45915875 |
aagaaccaacaaccaagacataataatcaattcaatgaatcacattggttttttccattaattagtcttcaaattgaacttcttaaaatatctgaatata |
45915974 |
T |
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| Q |
124 |
aaaaaatctctgtgcttacctccccaactattaaaagtccagtcgattccgccaatcctatgctccacatcatcagatt |
202 |
Q |
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| T |
45915975 |
aaaaca-ctctatgctcacctccccaactattgaaagtccagtcaattcccgcaatcctatgctccgcatcatcagatt |
45916052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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