View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6974_low_1 (Length: 372)
Name: NF6974_low_1
Description: NF6974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6974_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 42832527 - 42832729
Alignment:
| Q |
1 |
tcatgttccttctttttcctattcgtgttctttacctgtttattcataatctctttcacttgcttattttcaatttgttctattgtcttttattttgctt |
100 |
Q |
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| T |
42832527 |
tcatgttccttctttttcctattcgtgttctttacctgtttattcataatctctttcacttgcttattttcaatttgttctattgttttttattttgctt |
42832626 |
T |
|
| Q |
101 |
ttcataaagcgatgatgttctcaactacctattttaggaaggaatggaaaattttcgttcatgattataaaactaccaatggatccttctgagccttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42832627 |
ttcataaagcgatgatgttctcaactacctattttaggaaggaatggaaaatttttgttcatgattataaaactaccaatggatccttctgagccttcat |
42832726 |
T |
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| Q |
201 |
ctc |
203 |
Q |
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||| |
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| T |
42832727 |
ctc |
42832729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 42832815 - 42832881
Alignment:
| Q |
294 |
accagataaaatagtgaaagtggtagtgcatagtgtgaattaaaggttgttatgttgattgatgtcc |
360 |
Q |
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| T |
42832815 |
accagataaaatagtgaaagtggtagtgcatagtgtgaattaaagattgttatgttgattgatgtcc |
42832881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 42832756 - 42832791
Alignment:
| Q |
230 |
agggtagatttcaaaaacatgatacaagtcgctgca |
265 |
Q |
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| T |
42832756 |
agggtagatttcaaaaacatgatacaagtcgctgca |
42832791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 41940824 - 41940905
Alignment:
| Q |
119 |
tctcaactacctattttaggaaggaatggaaaattttcgttcatgattataaaactaccaatggatccttctgagccttcat |
200 |
Q |
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| T |
41940824 |
tctcaactacctattttatgaaggaatggaaaattttcctttatgattagaaaactaccaatggatccttctgagccttcat |
41940905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 28815780 - 28815872
Alignment:
| Q |
109 |
gcgatgatgttctcaactacctattttaggaaggaatggaaaattttcgttcatgatta-taaaactaccaatggatccttctgagccttcat |
200 |
Q |
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||||||||||| |||||||||||||| |||||||| || ||||||| || ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
28815780 |
gcgatgatgttgaaaactacctattttatgaaggaattgagaattttcctttatgattagtaaaattaccaatggatccttctgagccttcat |
28815872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 44139689 - 44139614
Alignment:
| Q |
123 |
aactacctattttaggaaggaatggaaaattttcgttcatgattataaaactaccaatggatccttctgagccttc |
198 |
Q |
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|||||||||||||| |||||||| || ||||||| || ||||||| |||| ||||||||||||||||||||||||| |
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| T |
44139689 |
aactacctattttatgaaggaattgagaattttcctttatgattagaaaattaccaatggatccttctgagccttc |
44139614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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