View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6974_low_2 (Length: 369)
Name: NF6974_low_2
Description: NF6974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6974_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 24324250 - 24324037
Alignment:
| Q |
27 |
agcttattaccctgcaaaatgcattttattttcttaaactcctttctttgaaaactctaagttgtaatcatatatatcactacttaggctcatgaaatga |
126 |
Q |
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| T |
24324250 |
agcttattaccatgcaaaatgcattttattttcttaaactcctttctttgaaaactctaagttgtaatcat--atatcactacttaggctcatgaaatga |
24324153 |
T |
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| Q |
127 |
tttaattttgatgtttcttacgctactctaaggtattaaaaattcattcaattggtcatgtgtacatcattaatttgaaactatttttctttcctggttc |
226 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
24324152 |
tttaattttgatgtttcttac---actctaaggtattaaaaattcatttgattggtcatgtgtacatctttaatttgaaactattttt-tttccttgttc |
24324057 |
T |
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| Q |
227 |
aaaaacagaaattccaacca |
246 |
Q |
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|||||||||||||||||||| |
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| T |
24324056 |
aaaaacagaaattccaacca |
24324037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 24323483 - 24323363
Alignment:
| Q |
249 |
catatcacattaatttattgattacttgaactgagtgtaaagctttagtttcttcacgatttccagtgcccatagagcaagatccaaggaaagcaacgtt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24323483 |
catatcacattaatttattgattacttgaactgagtgtaaagctttagtttcttcacgatttccagtgcccatagagcaagatccaaggaaagcaacgtt |
24323384 |
T |
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| Q |
349 |
gccaattcctaaatcatctcc |
369 |
Q |
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| T |
24323383 |
gccaattcctaaatcatctcc |
24323363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 24336143 - 24336023
Alignment:
| Q |
249 |
catatcacattaatttattgattacttgaactgagtgtaaagctttagtttcttcacgatttccagtgcccatagagcaagatccaaggaaagcaacgtt |
348 |
Q |
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| T |
24336143 |
catatcacattaatttattgattacttgaaccgagtgtaaagctttagtttcttcacgatttccagtgcccatagagcaagatccaaggaaagcaacgtt |
24336044 |
T |
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| Q |
349 |
gccaattcctaaatcatctcc |
369 |
Q |
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| T |
24336043 |
gccaattcctaaatcatctcc |
24336023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 24341819 - 24341631
Alignment:
| Q |
19 |
tcttctgcagcttattaccctgcaaaatgcattttattttct--taaactcctttctttgaaaactctaagttgtaatcatatatatcactacttaggct |
116 |
Q |
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| T |
24341819 |
tcttctacagcttattaccatgcaaaatgcattcttttctctcttaaacttctgtcttcgaaaactctaagttgtaatcataa----cgctatttaggct |
24341724 |
T |
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| Q |
117 |
catgaaatgatttaattttgatgtttcttacgctactctaaggtattaaaaattcattcaattggtcatgtgtacatcattaatttgaaactattttt |
214 |
Q |
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| T |
24341723 |
catgaaatgatttagtttttatgtttcttacacta-----aggtattaaaaattcatttaattggtcatgtgcaggtcattaatttgagactattttt |
24341631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 24354184 - 24353996
Alignment:
| Q |
19 |
tcttctgcagcttattaccctgcaaaatgcattttattttct--taaactcctttctttgaaaactctaagttgtaatcatatatatcactacttaggct |
116 |
Q |
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|||||| |||||||||||| ||||||||||||| | || ||| |||||| || |||| ||||||||||||||||||||||| | ||| ||||||| |
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| T |
24354184 |
tcttctacagcttattaccatgcaaaatgcattcttttctctcttaaacttctgtcttcgaaaactctaagttgtaatcataa----cgctatttaggct |
24354089 |
T |
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| Q |
117 |
catgaaatgatttaattttgatgtttcttacgctactctaaggtattaaaaattcattcaattggtcatgtgtacatcattaatttgaaactattttt |
214 |
Q |
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| T |
24354088 |
catgaaatgatttagtttttatgtttcttacacta-----aggtattaaaaattcatttaattggtcatgtgcaggtcattaatttgagactattttt |
24353996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 24311397 - 24311344
Alignment:
| Q |
153 |
tctaaggtattaaaaattcattcaattggtcatgtgtacatcattaatttgaaa |
206 |
Q |
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| T |
24311397 |
tctaaagtattaaaaattcatttaaatggtcatgtgcagatcatttatttgaaa |
24311344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 29417432 - 29417323
Alignment:
| Q |
260 |
aatttattgattacttgaactgagtgtaaagctttagtttcttcacgatttccagtgcccatagagcaagatccaaggaaagcaacgttgccaattccta |
359 |
Q |
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| T |
29417432 |
aatttgttgattacttgaactgattgtaaagctgcagtttcttcgcgatttccattacccatggagcaagatccaaggaaagcaacgttgccaattccta |
29417333 |
T |
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| Q |
360 |
aatcatctcc |
369 |
Q |
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| T |
29417332 |
aatcatctcc |
29417323 |
T |
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