View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6974_low_5 (Length: 280)
Name: NF6974_low_5
Description: NF6974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6974_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 53491486 - 53491223
Alignment:
| Q |
8 |
aaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattg |
107 |
Q |
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| T |
53491486 |
aaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattg |
53491387 |
T |
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| Q |
108 |
aaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtc |
207 |
Q |
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| T |
53491386 |
aaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtc |
53491287 |
T |
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| Q |
208 |
attttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
271 |
Q |
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| T |
53491286 |
attttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 53499079 - 53498819
Alignment:
| Q |
8 |
aaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattg |
107 |
Q |
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| T |
53499079 |
aaagcaactgtgaatatgctgtgtgaagcaaaaa-tacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatg |
53498981 |
T |
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| Q |
108 |
aaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtc |
207 |
Q |
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| T |
53498980 |
aaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtc |
53498883 |
T |
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| Q |
208 |
attttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
271 |
Q |
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||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
53498882 |
attttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 16070165 - 16069958
Alignment:
| Q |
8 |
aaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattg |
107 |
Q |
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|||||| | ||||| |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| || |
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| T |
16070165 |
aaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagataactattctcttgaaagaaagtattctgaatgggaaatg |
16070067 |
T |
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| Q |
108 |
aaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtc |
207 |
Q |
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| T |
16070066 |
aaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgttatattattgcacttgtattctttcatatgtc |
16069967 |
T |
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| Q |
208 |
attttgctt |
216 |
Q |
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||| ||||| |
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| T |
16069966 |
attatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
92 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
130 |
Q |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 45355289 - 45355440
Alignment:
| Q |
11 |
gcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaa |
110 |
Q |
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||||||||||||||||||| |||||| || | |||||||||| |||| | ||||| |||| |||||||| | |||| |||||| | |||||| ||||| |
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| T |
45355289 |
gcaactgtgaatatgttgttggaagcaggaatt-cgtgctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaa |
45355387 |
T |
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| Q |
111 |
ggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
163 |
Q |
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||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355388 |
ggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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