View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_high_1 (Length: 904)

Name: NF6975_high_1
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_high_1
NF6975_high_1
[»] chr4 (2 HSPs)
chr4 (701-876)||(53410135-53410310)
chr4 (190-279)||(29818485-29818574)
[»] chr2 (4 HSPs)
chr2 (195-311)||(44068778-44068895)
chr2 (195-311)||(25626521-25626638)
chr2 (173-274)||(30549084-30549186)
chr2 (195-311)||(15079876-15079993)
[»] chr8 (2 HSPs)
chr8 (195-311)||(8114300-8114417)
chr8 (176-311)||(15067600-15067737)
[»] chr5 (1 HSPs)
chr5 (173-311)||(554284-554424)
[»] chr1 (2 HSPs)
chr1 (173-275)||(11017975-11018078)
chr1 (195-273)||(16394873-16394951)
[»] chr6 (1 HSPs)
chr6 (207-273)||(6469585-6469651)
[»] chr3 (2 HSPs)
chr3 (195-273)||(4539904-4539982)
chr3 (270-319)||(4127350-4127399)
[»] chr7 (2 HSPs)
chr7 (196-311)||(47990939-47991055)
chr7 (245-311)||(47390511-47390579)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 701 - 876
Target Start/End: Original strand, 53410135 - 53410310
Alignment:
Q  701 acaacctgcccaatcttttatggttattcacaaaaatatgttttcaattgattttcctacggttttcaatactttttaaatttaatgtcatgtcgatttt 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||    
T  53410135 acaacctgcccaatcttttatggttattcacaaaaatatgttttcaattgattttcctacggtttctaatactttttaaatttaatgacttgtcgatttt 53410234  T
Q  801 cttgccattttgtattgaaattgttttatgctgatatccatacaaattttagcacgttcaaattttgttttaaaag 876  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53410235 cttgcaattttgtattgaaattgttttatgctgatatccatacaaattttagcacgttcaaattttgttttaaaag 53410310  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 29818574 - 29818485
Alignment:
Q  190 tatagaatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagattc 279  Q
    |||| |||||| ||||||||| || | || ||||||  | |||| |||| |||||||||||| || |||||| || ||||||||||||||    
T  29818574 tataaaatatatgtatcaaaaattatccaatcaacttcttaaaagttaaattatcatgttttccaatgcaaatttattcattttagattc 29818485  T

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Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 44068895 - 44068778
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagatt-cttaacgtgtgtcat 293  Q
    |||||| ||||||||||| ||||| ||||||  | |||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||| |||| | |    
T  44068895 aatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaattatcatgtttttcaatgcaaagttgttcattttagattccttaacatgtgccct 44068796  T
Q  294 taggatacaagttaacat 311  Q
    ||||  ||||||||||||    
T  44068795 tagggcacaagttaacat 44068778  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 25626521 - 25626638
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagatt-cttaacgtgtgtcat 293  Q
    |||||||||||||||||| ||| ||||||||  | |||| |||| |||||||||||| || | |||| ||||||||||||| || |||||| |||| | |    
T  25626521 aatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaattatcatgttttccaattcaaagttgttcattttaggttccttaacatgtgccct 25626620  T
Q  294 taggatacaagttaacat 311  Q
    ||||  ||||||||||||    
T  25626621 tagggcacaagttaacat 25626638  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 30549084 - 30549186
Alignment:
Q  173 catgttaagggacttgttatagaa-tatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatt 271  Q
    |||||||||| |||  |||||||| |||||||||||||||| ||||| ||||||  | |||  |||| ||||||||||||| | |||||| ||| |||||    
T  30549084 catgttaaggaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaattatcatgttttttaatgcaaatttgctcatt 30549183  T
Q  272 tta 274  Q
    |||    
T  30549184 tta 30549186  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 15079876 - 15079993
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagatt-cttaacgtgtgtcat 293  Q
    ||||||| || ||||||| ||||| ||||||  | |||| ||||  |||||| ||||||| || ||||||| || |||||| || ||||||  ||||| |    
T  15079876 aatatacatagcaaaagtcgtgcattcaacttcttaaaagttaaactatcatatttttcaatgtaaaattgctctttttaggtttcttaacacgtgtcct 15079975  T
Q  294 taggatacaagttaacat 311  Q
    ||||| ||||||||||||    
T  15079976 taggacacaagttaacat 15079993  T

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Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 195 - 311
Target Start/End: Complemental strand, 8114417 - 8114300
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagatt-cttaacgtgtgtcat 293  Q
    |||||| |||| |||||| |||||||||| | || ||||||||| ||||||||||||| | |||||||||| |||||||| ||| |||||| |||| | |    
T  8114417 aatatatgtattaaaagtcgtgcagtcaattttttaaaaattaaattatcatgttttttaatgcaaaattgctcattttaaattccttaacatgtgccct 8114318  T
Q  294 taggatacaagttaacat 311  Q
    ||||  ||||||||||||    
T  8114317 tagggcacaagttaacat 8114300  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 15067600 - 15067737
Alignment:
Q  176 gttaagggacttgttatagaa-tatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatttta 274  Q
    ||||||| ||| ||||||||| || ||||||||||||| |||||||||| |  | |||| |||| |||| ||||||| || |||||| ||| | ||||||    
T  15067600 gttaaggaactcgttatagaaataaacgtatcaaaagtcgtgcagtcaatttctcaaaagttaaattatgatgttttccaatgcaaagttgcttatttta 15067699  T
Q  275 gatt-cttaacgtgtgtcattaggatacaagttaacat 311  Q
    | || |||||| |||| | ||| |  ||||||||||||    
T  15067700 ggttccttaacatgtgcctttacggcacaagttaacat 15067737  T

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Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 554424 - 554284
Alignment:
Q  173 catgttaagggacttgttatagaa-tatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatt 271  Q
    |||||||||| |||  |||||||| |||| |||| |||||  |||||||||||| || |||| |||| ||||||| |||| || ||||||||||||||||    
T  554424 catgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaaattatcatattttccaatgcaaaattgttcatt 554325  T
Q  272 ttaga-ttcttaacgtgtgtcattaggatacaagttaacat 311  Q
    || || |||||||| ||||   |||||| ||||||||||||    
T  554324 ttggatttcttaacatgtgctcttaggacacaagttaacat 554284  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 11018078 - 11017975
Alignment:
Q  173 catgttaagggacttgttatagaa-tatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatt 271  Q
    |||||||||| |||| |||||||| ||||||||| |||||| ||||||||||||  | |||| |||| |||||||||||| || |||||| ||| |||||    
T  11018078 catgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaattatcatgttttccaatgcaaagttgctcatt 11017979  T
Q  272 ttag 275  Q
    ||||    
T  11017978 ttag 11017975  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 16394873 - 16394951
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatttt 273  Q
    ||||||||||| |||||| |  ||||| |||  | |||| |||| ||||||||||||||| |||||| |||||||||||    
T  16394873 aatatacgtattaaaagtcgaacagtctacttcttaaaagttaaattatcatgtttttcaatgcaaagttgttcatttt 16394951  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 6469651 - 6469585
Alignment:
Q  207 aaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatttt 273  Q
    |||||| ||||||||||||  | ||||||||| ||||||||||||||| |||||| ||| |||||||    
T  6469651 aaaagtcgtgcagtcaacttcttaaaaattaaattatcatgtttttcaatgcaaagttgctcatttt 6469585  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 4539904 - 4539982
Alignment:
Q  195 aatatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcatttt 273  Q
    |||||| |||| |||| | ||||| ||||||  | |||| |||| ||||||||||||||| ||||||||||||||||||    
T  4539904 aatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaattatcatgtttttcaatgcaaaattgttcatttt 4539982  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 4127399 - 4127350
Alignment:
Q  270 ttttagattcttaacgtgtgtcattaggatacaagttaacataatccatt 319  Q
    |||||| |||||||| |||||||| ||| ||||||||||||| |||||||    
T  4127399 ttttagtttcttaacttgtgtcataagggtacaagttaacatgatccatt 4127350  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 47991055 - 47990939
Alignment:
Q  196 atatacgtatcaaaagttgtgcagtcaactcttgaaaaattaagttatcatgtttttcagtgcaaaattgttcattttagatt-cttaacgtgtgtcatt 294  Q
    ||||||||||||||||  ||||||| ||||| | |||| |||| |||||||||||| || |||||| ||  ||||||||| || |||||| | |  | ||    
T  47991055 atatacgtatcaaaagccgtgcagtgaactccttaaaagttaaattatcatgttttccaatgcaaagttactcattttaggttccttaacatataccctt 47990956  T
Q  295 aggatacaagttaacat 311  Q
    |||| ||||||||||||    
T  47990955 aggacacaagttaacat 47990939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 47390579 - 47390511
Alignment:
Q  245 atgtttttcagtgcaaaattgttcattttagattc--ttaacgtgtgtcattaggatacaagttaacat 311  Q
    |||||||||| | |||||||||||||||||  |||  ||||| ||| |||||||| |||||||||||||    
T  47390579 atgtttttcaatacaaaattgttcattttaagttcttttaacatgtatcattagggtacaagttaacat 47390511  T

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