View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_high_10 (Length: 400)

Name: NF6975_high_10
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_high_10
NF6975_high_10
[»] chr4 (27 HSPs)
chr4 (17-387)||(1548132-1548503)
chr4 (212-387)||(1552668-1552846)
chr4 (68-387)||(546933-547255)
chr4 (182-379)||(1600447-1600647)
chr4 (75-358)||(570400-570680)
chr4 (312-378)||(8187095-8187161)
chr4 (253-387)||(553499-553633)
chr4 (150-379)||(55908567-55908799)
chr4 (307-379)||(1524485-1524557)
chr4 (295-374)||(532222-532301)
chr4 (312-387)||(1519146-1519221)
chr4 (312-379)||(12121461-12121528)
chr4 (317-378)||(659738-659799)
chr4 (167-370)||(3438422-3438628)
chr4 (253-352)||(644885-644984)
chr4 (312-379)||(1513411-1513478)
chr4 (104-352)||(21834174-21834422)
chr4 (312-370)||(8184034-8184092)
chr4 (335-381)||(12116602-12116648)
chr4 (231-352)||(53761692-53761816)
chr4 (97-282)||(8186877-8187065)
chr4 (302-379)||(640943-641020)
chr4 (298-359)||(1537757-1537818)
chr4 (326-378)||(1508021-1508073)
chr4 (312-359)||(1489365-1489412)
chr4 (312-378)||(1545802-1545868)
chr4 (312-369)||(7225887-7225944)
[»] chr8 (7 HSPs)
chr8 (104-387)||(18315066-18315352)
chr8 (157-387)||(32151321-32151551)
chr8 (73-204)||(17627821-17627952)
chr8 (253-352)||(28246240-28246339)
chr8 (312-378)||(27922537-27922603)
chr8 (307-358)||(21235607-21235658)
chr8 (176-354)||(17636262-17636447)
[»] chr3 (9 HSPs)
chr3 (68-387)||(51113541-51113860)
chr3 (143-359)||(13470567-13470783)
chr3 (251-374)||(51120836-51120959)
chr3 (143-379)||(51764275-51764511)
chr3 (77-206)||(514494-514623)
chr3 (312-352)||(1657306-1657346)
chr3 (327-367)||(27005791-27005831)
chr3 (314-371)||(33714861-33714918)
chr3 (327-367)||(36811046-36811086)
[»] chr6 (25 HSPs)
chr6 (230-387)||(6432181-6432341)
chr6 (177-387)||(7119177-7119387)
chr6 (177-387)||(7131655-7131865)
chr6 (134-375)||(6426543-6426784)
chr6 (230-375)||(6394896-6395044)
chr6 (230-387)||(6402880-6403040)
chr6 (250-378)||(6589265-6589393)
chr6 (292-375)||(6410038-6410121)
chr6 (230-359)||(6416014-6416146)
chr6 (292-358)||(12102315-12102381)
chr6 (296-379)||(6596916-6596999)
chr6 (253-352)||(11936220-11936319)
chr6 (253-352)||(11948200-11948299)
chr6 (294-360)||(6423264-6423330)
chr6 (230-358)||(6594525-6594656)
chr6 (235-372)||(19632474-19632611)
chr6 (143-206)||(9411556-9411619)
chr6 (324-387)||(28935069-28935132)
chr6 (230-387)||(6585156-6585316)
chr6 (230-387)||(7994101-7994261)
chr6 (104-205)||(6432363-6432464)
chr6 (314-387)||(14802356-14802429)
chr6 (295-358)||(9410751-9410814)
chr6 (307-358)||(9411404-9411455)
chr6 (322-379)||(10579750-10579807)
[»] chr2 (3 HSPs)
chr2 (73-387)||(32785537-32785851)
chr2 (150-379)||(1037503-1037735)
chr2 (314-387)||(45245091-45245164)
[»] chr7 (2 HSPs)
chr7 (178-387)||(10614613-10614822)
chr7 (104-352)||(15091947-15092195)
[»] chr5 (5 HSPs)
chr5 (148-378)||(41889391-41889624)
chr5 (251-376)||(20478025-20478150)
chr5 (315-378)||(41901542-41901605)
chr5 (183-378)||(32267504-32267699)
chr5 (171-280)||(41901398-41901510)
[»] chr1 (4 HSPs)
chr1 (104-387)||(19468295-19468578)
chr1 (68-202)||(9581276-9581410)
chr1 (93-202)||(9586844-9586953)
chr1 (312-376)||(52082612-52082676)
[»] scaffold0295 (1 HSPs)
scaffold0295 (220-379)||(533-695)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 1548132 - 1548503
Alignment:
Q  17 agtccttcacttagtgagatcagaatggaatacaactttggaaatagttttgagacttctaattctttcatggaccttgttgtaagacctcaattaaagt 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548132 agtccttcacttagtgagatcagaatggaatacaactttgaaaatagttttgagacttctaattctttcatggaccttgttgtaagacctcaattaaagt 1548231  T
Q  117 cactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548232 cactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcag 1548331  T
Q  217 tggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctac-ttggactgaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1548332 tggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaa 1548431  T
Q  316 ctttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548432 ctttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 1548503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 387
Target Start/End: Original strand, 1552668 - 1552846
Alignment:
Q  212 tgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaa---aagtgaagctacttg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |   ||| |||||||||||    
T  1552668 tgcactggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttg 1552767  T
Q  309 gactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  1552768 gactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgat 1552846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 68 - 387
Target Start/End: Complemental strand, 547255 - 546933
Alignment:
Q  68 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 167  Q
    |||| |||||||||||||| |||  |||||||||| |||||||| ||||| |||  |||| || | |||||| || |||||||||||| ||||||||| |    
T  547255 gagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgt 547156  T
Q  168 tttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagat 264  Q
    || |||| || |||||||||||||||||||||||||| | | ||||  ||  |||||| || ||  |||||||||| ||||||   ||||||||||||||    
T  547155 ttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagat 547056  T
Q  265 tagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtatt 364  Q
     || || ||||||||| |   | |||||  |||||| ||| ||||| ||||||||||| |||| ||| |||||||| |||||||||||| ||||| | |     
T  547055 aaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtc 546956  T
Q  365 gatgatgaaacactcaatgtgat 387  Q
     |||||||||||||| |||||||    
T  546955 aatgatgaaacactctatgtgat 546933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 379
Target Start/End: Complemental strand, 1600647 - 1600447
Alignment:
Q  182 cccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaact 278  Q
    |||||||||||||||||||||||||  | ||||| |  |||||| || |||||||||||| ||||||||||   || || ||| |||||||| |||||||    
T  1600647 cccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaact 1600548  T
Q  279 tagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||| |   ||| || | ||||||| |  ||| ||||||||||| |||  |||||||||||||||||||||||| |||||||  |||| |||||| ||||    
T  1600547 tagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcact 1600448  T
Q  379 c 379  Q
    |    
T  1600447 c 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 358
Target Start/End: Complemental strand, 570680 - 570400
Alignment:
Q  75 ctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttc 174  Q
    |||||||||  |||||  |||||||||  | |||||| ||||| || |  ||||||| |||| || | ||||| ||||||| |||   ||| ||| ||||    
T  570680 ctaattcttcaatggaatttgttgtaaaccatcaattgaagtctctattcttgactcgcaatacatggttaagtgatgaaaacattttaatgtttgcttc 570581  T
Q  175 gattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttg 274  Q
     |||||||||||||||||  | |||||||| | | |||||| |   |||||   |||  |||||||| |||||||||||||||||||  |||| || |||    
T  570580 tattttccccaatttgcagatacttgatttaagttattgcaatcagatatc---cgatagtatttgtcaagttttaagatgttgtaaacttaggcatttg 570484  T
Q  275 aacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 358  Q
    ||||||||||   | | ||||||||| || | |||| ||||||||||| ||| |||||| |||||||||||||||||| |||||    
T  570483 aacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 8187095 - 8187161
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacact 8187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 553633 - 553499
Alignment:
Q  253 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||| |||||||| ||||||||| | ||  ||| || ||||||| ||| |  | |||||||| || ||| |||||||||||||||||||||||||    
T  553633 atgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtca 553534  T
Q  353 catacaagtattgatgatgaaacactcaatgtgat 387  Q
      ||||||  ||||||||||| |||| ||||||||    
T  553533 tttacaagagttgatgatgaagcacttaatgtgat 553499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 379
Target Start/End: Original strand, 55908567 - 55908799
Alignment:
Q  150 atgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttt 249  Q
    |||||| ||||| | | ||| |||| |||||||||||||||||| | ||||||||||     |||  |  |||||| || |||||||||||||||||| |    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct 55908666  T
Q  250 aag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaac 346  Q
    |||   |||||||||| ||||||| ||||| |||||     ||| || |||||| |||||| || | |||||| || ||||  || | |||||||| |||    
T  55908667 aaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaac 55908766  T
Q  347 ttgtcacatacaagtattgatgatgaaacactc 379  Q
    |||||||||||| || |||||||||||||||||    
T  55908767 ttgtcacatacatgtgttgatgatgaaacactc 55908799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 1524485 - 1524557
Alignment:
Q  307 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    |||| ||||||||||| |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  1524485 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactc 1524557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 532301 - 532222
Alignment:
Q  295 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaa 374  Q
    |||||| ||||||||| ||||||||||| | ||||| || |||||||||||||||||| ||||||  |||||||||||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaa 532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 387
Target Start/End: Original strand, 1519146 - 1519221
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||  || ||||| |||||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgat 1519221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 12121461 - 12121528
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||| | |||||||||||||||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactc 12121528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 659799 - 659738
Alignment:
Q  317 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacact 659738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 370
Target Start/End: Original strand, 3438422 - 3438628
Alignment:
Q  167 ttttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaaga 263  Q
    |||||||| ||||||||||||||||| ||||||||| |||   | |||     |||||| ||||||||| ||  | ||||||||||   |||||||||||    
T  3438422 ttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagttttaaggagatgttgtaaga 3438521  T
Q  264 ttagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtat 363  Q
    ||||||| |||||||||||| || |||||  ||||||  |   || | ||||||||||  || | ||| ||||||| |||| |||||||||||||||  |    
T  3438522 ttagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagt 3438621  T
Q  364 tgatgat 370  Q
    |||||||    
T  3438622 tgatgat 3438628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 644984 - 644885
Alignment:
Q  253 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | |||||||||||  | ||||||||||| |||||||||||||||||||  ||||||||    
T  644984 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 1513411 - 1513478
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||||||| |||||||||| || |||||||||||||||  ||||| | |||||||||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactc 1513478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 352
Target Start/End: Original strand, 21834174 - 21834422
Alignment:
Q  104 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 203  Q
    |||||||||||||| |||| ||||   | ||||||| | ||||  |||||||  |||| ||| ||| |||| |||||||||||||| || ||||||||||    
T  21834174 cctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatt 21834273  T
Q  204 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 300  Q
    ||| |  || ||     ||||||||   ||||||||| |||||||||||   ||||||||||||||  || ||||||||| |  || |||  ||||||||    
T  21834274 tgacttcttccacacagatatcaga---aggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaa 21834370  T
Q  301 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||| | |  | ||||||| | ||||||| |||||||||||| ||||||||    
T  21834371 gctacatagtatcaactttgtagttcccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 8184034 - 8184092
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgat 370  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 12116602 - 12116648
Alignment:
Q  335 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaa 381  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12116602 gaggtgttgaacttgtcacatacaagtgttgatgatgaatcactcaa 12116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 352
Target Start/End: Original strand, 53761692 - 53761816
Alignment:
Q  231 aaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcc 327  Q
    ||||||||||| ||||||||||   ||||||||| ||||| || |||||||||||     ||| || |||||||||| ||||| ||||||||| | ||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcc 53761791  T
Q  328 caaactggaggtgttgaacttgtca 352  Q
    ||| || |||| |||||||||||||    
T  53761792 caagctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 282
Target Start/End: Original strand, 8186877 - 8187065
Alignment:
Q  97 tgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactg 196  Q
    ||||||||||||| | ||||| ||| |||||| | ||||||   | |||||  |||||| | || |||| || |||||  | ||||||||||||||  ||    
T  8186877 tgtaagacctcaactgaagtctctcagtttgatttacaattgttggttaagtaatgaaaacctcgaaatgttatcttccttattccccaatttgcagttg 8186976  T
Q  197 cttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttt---aagatgttgtaagattagacagttgaacttagc 282  Q
    |||||||||| | |||||  || |||||| || |||||||||||| |||||||    ||||||||| |||||||  | |||||||||||    
T  8186977 cttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 379
Target Start/End: Complemental strand, 641020 - 640943
Alignment:
Q  302 ctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||||| |||| |||||| | || | | |||||||||||||||||||| ||||||   |||||||||||||||||    
T  641020 ctacttggaatgaaatttgaactaccaatattggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactc 640943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 1537757 - 1537818
Alignment:
Q  298 gaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaa 359  Q
    |||||| | |||| ||||||||||| |||||||||| || ||||||||||||||| ||||||    
T  1537757 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 1508021 - 1508073
Alignment:
Q  326 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||||||| || |||||||||||||||||||| | | ||||||||||||||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacact 1508073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 1489365 - 1489412
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaa 359  Q
    ||||||||||| |||||||||| || ||||||||||||||| ||||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 1545868 - 1545802
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||||||| || |||| ||||||||||||||||||||||    ||||||  ||||||||||||||||    
T  1545868 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 1545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 7225887 - 7225944
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatga 369  Q
    ||||||||||| ||| | || ||||||| ||||||||||||||||||||  |||||||    
T  7225887 tgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatga 7225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 104 - 387
Target Start/End: Original strand, 18315066 - 18315352
Alignment:
Q  104 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 203  Q
    |||||||||||||| ||| |||| |||  ||||||| | |||||||| |||| |||||||||||||||||| |||||||||||||||||  |||||||||    
T  18315066 cctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatt 18315165  T
Q  204 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgta---agattagacagttgaacttagctcgtagtttaaaagtgaa 300  Q
    |||   | |||  |  |||| | || |||||||||||| |||||||| || |||||    ||||||||||||||||||||||||||  || || | ||||    
T  18315166 tgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagctcgtgattcaagaatgaa 18315265  T
Q  301 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||   ||||||||||| ||||| |||||||    
T  18315266 gctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgat 18315352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 157 - 387
Target Start/End: Complemental strand, 32151551 - 32151321
Alignment:
Q  157 catcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgt 256  Q
    ||||||||| ||| |||| |||||||| ||||||||||||||||||||||    ||||  |  |||||| || ||||| |||||| |||||||||||||     
T  32151551 catcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaagatgc 32151452  T
Q  257 tgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacata 356  Q
    | | ||||||| || ||||| ||  |  |  ||||| | |||||||| | |||| ||||||| ||| || |||| ||||||||||| |||||||||  ||    
T  32151451 tctgagattaggcatttgaatttcaccggctgtttacatgtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgta 32151352  T
Q  357 caagtattgatgatgaaacactcaatgtgat 387  Q
    ||||  ||||||||||||||||| |||||||    
T  32151351 caaggtttgatgatgaaacactctatgtgat 32151321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 17627821 - 17627952
Alignment:
Q  73 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 172  Q
    ||||||||||||  ||||  | |||||||| ||||||||||| || |||| |||| ||  |||||||    || | ||||||| ||||||||| ||| ||    
T  17627821 ttctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgct 17627920  T
Q  173 tcgattttccccaatttgcaactgcttgattt 204  Q
    || |||||||||||||||||||||||||||||    
T  17627921 tccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 28246240 - 28246339
Alignment:
Q  253 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||| |||||||| ||||| ||| ||||| ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  28246240 atgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcccaaactggaggtgttggacttgtca 28246339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 27922603 - 27922537
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcact 27922537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  307 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 358  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 354
Target Start/End: Original strand, 17636262 - 17636447
Alignment:
Q  176 attttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagt 272  Q
    ||||||||||||||||| |||||||||||     |||||| |   ||||||||  ||||||||||| ||||||||||   ||||| ||| ||||| || |    
T  17636262 attttccccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatt 17636361  T
Q  273 tgaacttagctcgtagtttaaaagtgaagctacttggac----tgaactttgaaattcccaaactggaggtgttgaacttgtcaca 354  Q
    |||||||||  ||  ||| || |||||| |||| | ||     ||||||||||| |||||||| ||||||||||||||||||||||    
T  17636362 tgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcaca 17636447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 387
Target Start/End: Original strand, 51113541 - 51113860
Alignment:
Q  68 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 167  Q
    |||| |||||||||||| ||||   ||||||||||||| ||||||||||| |||   |||  ||||||| || | ||||||||||| | ||||| |||      
T  51113541 gagaattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcataatga 51113640  T
Q  168 tttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaa---gatgttgtaagat 264  Q
    || |||| |||||||||||| |||| || |||||||| | | |||||  ||  |||||   ||||||||||||| |||||||||   |||||||||| ||    
T  51113641 ttgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatc---cgaaggtatttgtcaagttttaaagagatgttgtaaaat 51113737  T
Q  265 tagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtatt 364  Q
    ||| || ||||| ||||||    ||| |||| |||||||||||||| |||||||||||  ||||||||||||||||||  |||||||| ||||||   ||    
T  51113738 taggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggtt 51113837  T
Q  365 gatgatgaaacactcaatgtgat 387  Q
    ||||||||||||||| |||||||    
T  51113838 gatgatgaaacactctatgtgat 51113860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 359
Target Start/End: Original strand, 13470567 - 13470783
Alignment:
Q  143 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtg 242  Q
    ||||| ||||||  ||||| ||| ||| |||| | ||||||||||||||| ||||||||||||| |  ||||| |  | ||||| |   ||||||||||     
T  13470567 ttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaa---aggtatttgtc 13470663  T
Q  243 aagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggt 339  Q
    ||||||||||   ||||||||||||||| || |||||||||||   | ||  ||||||||||||||||||| |||||||||   ||||||| ||||||||    
T  13470664 aagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggt 13470763  T
Q  340 gttgaacttgtcacatacaa 359  Q
    ||||||||||||| ||||||    
T  13470764 gttgaacttgtcaaatacaa 13470783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 374
Target Start/End: Original strand, 51120836 - 51120959
Alignment:
Q  251 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgt 350  Q
    ||||||||||| |||||||| ||||||||  |  || ||| || |||||| || | |||| ||||||||||| ||| |||| ||||||||||||||||||    
T  51120836 agatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgt 51120935  T
Q  351 cacatacaagtattgatgatgaaa 374  Q
    | ||||||||  ||||||||||||    
T  51120936 cgcatacaagagttgatgatgaaa 51120959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 379
Target Start/End: Original strand, 51764275 - 51764511
Alignment:
Q  143 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtg 242  Q
    ||||| ||||||| ||||| ||| ||| |||| ||||||||||||||||| ||||||||||| | |  ||||| | |||||||     ||||| | ||||    
T  51764275 ttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatc---taaaggtgtctgtg 51764371  T
Q  243 aagtttta---agatgttgtaagattagacagttgaacttagctcgta-gtttaaaagtgaagctacttggactgaactttgaaattcccaaactggagg 338  Q
    ||||||||   ||||||| ||||||||| || |||||| || | || | ||| || |||||||||||||||| ||||||||| | |||| || |||||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatc-cgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggagg 51764470  T
Q  339 tgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||  ||||||||  |||||   |||||||| ||||||||    
T  51764471 tgttagacttgtcatttacaaaagttgatgataaaacactc 51764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 514494 - 514623
Alignment:
Q  77 aattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcga 176  Q
    ||||||||  ||||| ||||||| |  ||||||||||| || |||| |||| ||||||||||| ||||||||||||||| | | | ||| ||| |||| |    
T  514494 aattctttgttggactttgttgtgaaccctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaa 514593  T
Q  177 ttttccccaatttgcaactgcttgatttga 206  Q
    ||||||| |||||||| ||  |||||||||    
T  514594 ttttcccgaatttgcagctaattgatttga 514623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 1657346 - 1657306
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtca 1657306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 27005791 - 27005831
Alignment:
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgat 367  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgat 27005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 33714861 - 33714918
Alignment:
Q  314 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatg 371  Q
    ||||||||| || |||||||||||||| ||||||||||| |  |||| ||||||||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatg 33714918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 36811046 - 36811086
Alignment:
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgat 367  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  36811046 ccaaactggaggtgttgaacttgtcccattcaagaattgat 36811086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 6432341 - 6432181
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| ||||||||||   |||||||||  ||| ||| |||||||||||   | || ||||||||||||||| |||| ||||||||||| |||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    |||| ||| ||||||||||||||||| |||||||  ||||||||||||||||  |||||||    
T  6432241 ccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgat 6432181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 387
Target Start/End: Complemental strand, 7119387 - 7119177
Alignment:
Q  177 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagtt 273  Q
    ||||||||||||| ||||| |||||||||| || ||||| |  ||||||    |||||||||||| ||||||||   ||||||| |||||||| ||| ||    
T  7119387 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatc---tgaaggtatttgtcaagttttaaggagatgttctaagattaaacattt 7119291  T
Q  274 gaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaa 373  Q
    ||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| |||| |   |||||||||||    
T  7119290 gaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaa 7119191  T
Q  374 acactcaatgtgat 387  Q
    |||||| |||||||    
T  7119190 acactccatgtgat 7119177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 387
Target Start/End: Complemental strand, 7131865 - 7131655
Alignment:
Q  177 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagtt 273  Q
    ||||||||||||| ||||| |||||||||| || ||||| |  ||||||    |||||||||||| ||||||||   ||||||| |||||||| ||| ||    
T  7131865 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatc---tgaaggtatttgtcaagttttaaggagatgttctaagattaaacattt 7131769  T
Q  274 gaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaa 373  Q
    ||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| |||| |   |||||||||||    
T  7131768 gaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatgatgaa 7131669  T
Q  374 acactcaatgtgat 387  Q
    |||||| |||||||    
T  7131668 acactccatgtgat 7131655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 375
Target Start/End: Complemental strand, 6426784 - 6426543
Alignment:
Q  134 aattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaag 233  Q
    |||||| | ||||| ||||||| ||||| ||| | | |||| |||||||||||||| || || ||||||||||    |||| |||  ||||| ||   ||    
T  6426784 aattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctga---ag 6426688  T
Q  234 gtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaa 330  Q
    |||||||||||||||||||   |||||||||| ||| ||| ||||||||||||    ||| ||| ||||| |||| |||| ||||||||| | ||||| |    
T  6426687 gtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccga 6426588  T
Q  331 actggaggtgttgaacttgtcacatacaagtattgatgatgaaac 375  Q
     |||||||||||||| |||||| | ||||| ||||||||||||||    
T  6426587 gctggaggtgttgaatttgtcaaacacaagcattgatgatgaaac 6426543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 6395044 - 6394896
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| |||||||||    |||||||||| ||| ||| ||||||||||||    ||| ||||||||| |||| |||| ||||||||| | |||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaac 375  Q
    || | ||||||||||||||||||||| |||||||  |||||||||||||    
T  6394944 ccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaac 6394896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 6403040 - 6402880
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| ||||||||||   ||||||||| ||||| || ||||||||| || |  ||| || |||||||||||||||| | ||||||| | |||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    || |||| || ||||||||||||||| |||| |   ||||||||||||||||| |||||||    
T  6402940 cccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgat 6402880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 6589265 - 6589393
Alignment:
Q  250 aagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttg 349  Q
    |||||||||||||||||| || |||||||||||     ||   |||||||||||||||||| ||||||||| | ||||||  ||||||||||||||||||    
T  6589265 aagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttg 6589364  T
Q  350 tcacatacaagtattgatgatgaaacact 378  Q
    ||| |||||| | || ||||| |||||||    
T  6589365 tcaaatacaaatgttaatgataaaacact 6589393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 375
Target Start/End: Complemental strand, 6410121 - 6410038
Alignment:
Q  292 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaac 375  Q
    |||||||||||||| |||| ||||||||||| ||||||| ||| |||||||||||| |||| |||||||  |||||||||||||    
T  6410121 aaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaac 6410038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 359
Target Start/End: Complemental strand, 6416146 - 6416014
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| |||||||||    ||||||||||||| | || |||||||||||   | ||  |||||||||||||| |||| || |||||| | |||    
T  6416146 gaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttc 6416047  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaa 359  Q
    |||| ||||||||||||||||||||| ||||||    
T  6416046 ccaacctggaggtgttgaacttgtcaaatacaa 6416014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 12102381 - 12102315
Alignment:
Q  292 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 358  Q
    ||||||||| || | |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  12102381 aaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 6596916 - 6596999
Alignment:
Q  296 gtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||| ||||| | | ||||||||||||||| | |||||||||||||||||||||  ||||| | |||||||||||||||||    
T  6596916 gtgaagcgacttgaaataaactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactc 6596999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 11936220 - 11936319
Alignment:
Q  253 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  11936220 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11936319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 352
Target Start/End: Original strand, 11948200 - 11948299
Alignment:
Q  253 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  11948200 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11948299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 6423330 - 6423264
Alignment:
Q  294 aagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaag 360  Q
    |||||||||||| || | |||||||| || ||||||| ||||||||||||||||||||| |||||||    
T  6423330 aagtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaag 6423264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 358
Target Start/End: Original strand, 6594525 - 6594656
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| ||||||||||   ||||| |||||||| ||| ||| ||||| |  |  ||| || ||||||||||| |||| | ||||||  | |||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttc 6594624  T
Q  327 ccaaactggaggtgttgaacttgtcacataca 358  Q
    ||||||||||||||||| |||||||| |||||    
T  6594625 ccaaactggaggtgttgtacttgtcaaataca 6594656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 372
Target Start/End: Complemental strand, 19632611 - 19632474
Alignment:
Q  235 tatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactg 334  Q
    ||||||| |||||||||||||||||||||| |  || ||||||||| ||||  ||| || ||| || ||||||||| | ||||||  | ||||||| ||     
T  19632611 tatttgtcaagttttaagatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagcta 19632512  T
Q  335 gaggtgttgaacttgtcacatacaagtattgatgatga 372  Q
    ||||||||| |||||||  ||||||   ||||||||||    
T  19632511 gaggtgttggacttgtcgtatacaaaggttgatgatga 19632474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 9411619 - 9411556
Alignment:
Q  143 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttga 206  Q
    ||||||||| ||| ||||||||  ||| |||| ||||||||||||||||| |||||||||||||    
T  9411619 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 28935132 - 28935069
Alignment:
Q  324 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||| |||| ||||||||||||||||||||||||||  |||| |||||| |||||| ||||||    
T  28935132 ttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgat 28935069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 6585156 - 6585316
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| | ||||||||   ||||| ||| ||||| || ||||||||  || |  ||| || |||||||||||||||| | ||||||  | ||     
T  6585156 gaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagtta 6585255  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    || |  ||||||| |||||||||||| ||||||   ||||||||||||||||| |||||||    
T  6585256 cccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgat 6585316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 7994101 - 7994261
Alignment:
Q  230 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 326  Q
    |||||||||||| | ||||||||   |||||||||||| || || |||||| ||||   | ||  || |||||||||||| ||| ||||||||| | |||    
T  7994101 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttc 7994200  T
Q  327 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    | || || |||||||||||| ||||| |||||||  || |||| ||||||||  |||||||    
T  7994201 cgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgat 7994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 6432464 - 6432363
Alignment:
Q  104 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 203  Q
    ||||| |||||||| |||| ||||  |||||||||| | |||||  ||||||  |||| ||| ||| |||| |||||||||||||||||||  |||||||    
T  6432464 cctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatt 6432365  T
Q  204 tg 205  Q
    ||    
T  6432364 tg 6432363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 14802429 - 14802356
Alignment:
Q  314 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||||||| |||||||  |||| |||||||| |||||| ||||||   ||||||||||||||||| |||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgat 14802356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 9410814 - 9410751
Alignment:
Q  295 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 358  Q
    ||||||| || ||||| |||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  9410814 agtgaagttaattggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 9411455 - 9411404
Alignment:
Q  307 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 358  Q
    |||| ||||||||||  ||||||| ||||||||||||||||||||| |||||    
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 10579750 - 10579807
Alignment:
Q  322 aattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||| | ||||||||||||||||||||| ||||||   |||||||| ||||||||    
T  10579750 aattccccagctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactc 10579807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 387
Target Start/End: Original strand, 32785537 - 32785851
Alignment:
Q  73 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 172  Q
    |||||||||||| |||||  |||||||||  |||||||||||||  |||  |||| ||| |||||   | ||||||||||||| |||||  || ||||||    
T  32785537 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttct 32785636  T
Q  173 tcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagt 272  Q
    || |||||  ||||||||||||| ||||||||||   |||||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||| |    
T  32785637 tctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatt 32785736  T
Q  273 tgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatga 372  Q
    |||| || |  |    || || | |  |||  | | || |||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32785737 tgaatttggaccacttttcaagaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatga 32785836  T
Q  373 aacactcaatgtgat 387  Q
    | ||||  |||||||    
T  32785837 agcactttatgtgat 32785851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 379
Target Start/End: Original strand, 1037503 - 1037735
Alignment:
Q  150 atgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttt 249  Q
    |||||| ||||| | | ||| |||| |||||||||||||||||| | ||||||||||     |||  |  |||||| || ||||||||||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagtttt 1037602  T
Q  250 aag---atgttgtaagattagacagttgaacttagc-tcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaa 345  Q
    |||   |||||||||| ||||||| ||||| ||||| |  || || || |||||| |||||| || | |||||| || ||||  || | |||||||| ||    
T  1037603 aaggagatgttgtaaggttagacatttgaatttagcctacta-ttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaa 1037701  T
Q  346 cttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||||||||||||| || |||||||||||||||||    
T  1037702 cttgtcacatacatgtgttgatgatgaaacactc 1037735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 45245091 - 45245164
Alignment:
Q  314 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
    ||||||||| |||| ||||| ||||||||||| |||||| | ||||   ||||||||||||||||| |||||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgat 45245164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 387
Target Start/End: Complemental strand, 10614822 - 10614613
Alignment:
Q  178 tttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttg 274  Q
    ||||||||||||||||||||||||||||| |  ||||| |  | |||   | |||||||||||| ||||||||||   ||||||||||||||| || |||    
T  10614822 tttccccaatttgcaactgcttgatttgaatcgttgcaatctcttat---atgaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttg 10614726  T
Q  275 aacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaa 374  Q
    ||||||||   | ||  ||||||||||||||||||| ||||| |||   ||||||| ||||||||||||||||||||| |||| |   || ||||| |||    
T  10614725 aacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaa 10614626  T
Q  375 cactcaatgtgat 387  Q
    ||||| |||||||    
T  10614625 cactctatgtgat 10614613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 352
Target Start/End: Original strand, 15091947 - 15092195
Alignment:
Q  104 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 203  Q
    |||||||||||||| |||| |||| |||||||||  || ||||| ||||||| ||||| |||| || |||| ||||||||||| ||  | || |||||||    
T  15091947 cctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaacttagagctacttgatt 15092046  T
Q  204 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 300  Q
    ||  | |||||  |  ||||||     ||||||||| | ||||||||||   ||||| |||| ||| ||| ||||||||| || |  ||||||  |||||    
T  15092047 tgggtcattgctataacatatc---tcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaa 15092143  T
Q  301 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 352  Q
     |||| |||| ||||||||| | ||||| | |||||||||||||| ||||||    
T  15092144 actacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 15092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 378
Target Start/End: Original strand, 41889391 - 41889624
Alignment:
Q  148 agatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtt 247  Q
    |||||||  ||||| ||| ||| |||| |||||||| |||||||| || ||||||||||  |||||  || ||||||  || |||||||||  | |||||    
T  41889391 agatgaagacatcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagtt 41889490  T
Q  248 ttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttga 344  Q
    |||||   ||||||||| |||||| | ||||||||| |  |  ||| || |||||||||||||| | |||||||| || |||||||| ||||||||||||    
T  41889491 ttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttga 41889590  T
Q  345 acttgtcacatacaagtattgatgatgaaacact 378  Q
    |||| ||| ||||||   ||||||||||||||||    
T  41889591 acttatcatatacaaaagttgatgatgaaacact 41889624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 376
Target Start/End: Original strand, 20478025 - 20478150
Alignment:
Q  251 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgt 350  Q
    |||||||||||| | || || |||||||||||| |  ||  || || ||||||||||||| | ||| ||| ||||||| | |||||||||||||||||||    
T  20478025 agatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaacttgt 20478124  T
Q  351 cacatacaagtattgatgatgaaaca 376  Q
    || |||||| | ||||||| ||||||    
T  20478125 catatacaaatgttgatgacgaaaca 20478150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 41901542 - 41901605
Alignment:
Q  315 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||   ||||||||||| ||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcact 41901605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 378
Target Start/End: Complemental strand, 32267699 - 32267504
Alignment:
Q  183 ccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaactt 279  Q
    |||||||||| |||||||||||||  |||||  || ||||||| || ||||||||   | || |||||||   ||||||||| |||||||| ||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  280 agctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 378  Q
    | | |   ||| || |||||| |||   | | ||||||||||| |||||||| ||||||| |||||||||||||| ||||   ||||||||||| ||||    
T  32267599 atcccagtgttcaacagtgaaacta---gaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcact 32267504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 41901398 - 41901510
Alignment:
Q  171 cttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattag 267  Q
    |||| ||||||||||||||||| |||||||||||||  |||||  || ||||||  || |||||||||  | ||||||||||    |||||||| |||||    
T  41901398 cttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaacattag 41901497  T
Q  268 acagttgaactta 280  Q
    ||| |||||||||    
T  41901498 acatttgaactta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 387
Target Start/End: Original strand, 19468295 - 19468578
Alignment:
Q  104 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 203  Q
    |||||||||||||  ||||  ||| || | |||||| | ||||| ||||||| ||||| ||| ||| |||| ||||| ||||||||||| ||||||||||    
T  19468295 cctcaattaaagtatctctacttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatt 19468394  T
Q  204 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaaga---tgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 300  Q
    |||     ||||    |||||| ||   ||| |||||| ||||||||||    |||| ||| ||||| || || |||||||| |   ||| || ||||||    
T  19468395 tgaactcatgcaaccacatatcgga---aggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaa 19468491  T
Q  301 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgat 387  Q
     ||||||||| ||||||||| | ||||||| |||||||||||||| |||||| ||||||   ||||||||||||||||  |||||||    
T  19468492 tctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgat 19468578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 9581410 - 9581276
Alignment:
Q  68 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 167  Q
    |||| |||||| ||||||| |||  ||| |||||| |||||||||||||| ||   ||||  |||||||  | | ||||||||| ||| ||||| ||| |    
T  9581410 gagaattctaagtctttcaaggatattggtgtaagccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgt 9581311  T
Q  168 tttcttcgattttccccaatttgcaactgcttgat 202  Q
    || |||| ||||||||||||||||| |||||||||    
T  9581310 ttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 9586953 - 9586844
Alignment:
Q  93 ttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgca 192  Q
    ||||||||||||||||||| ||||| ||   ||||  || ||||  | | ||||||||| ||| ||||| ||| ||| |||| |||||||||||||||||    
T  9586953 ttgttgtaagacctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T
Q  193 actgcttgat 202  Q
     |||||||||    
T  9586853 gctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 52082676 - 52082612
Alignment:
Q  312 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaaca 376  Q
    |||||||| || || ||||| |||||||||||||||||||| | ||||  |||||||||||||||    
T  52082676 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 52082612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 379
Target Start/End: Original strand, 533 - 695
Alignment:
Q  220 catatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaac 316  Q
    |||||| || |||||||||||||||||| ||||   ||||||||||  |||||| ||||| |||||     ||| || |||||| |||||| || | |||    
T  533 catatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaataaac 632  T
Q  317 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactc 379  Q
    ||| || ||||  || | |||||||| |||||||||||||||||| | |||||||||||||||    
T  633 tttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactc 695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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