View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_11 (Length: 373)
Name: NF6975_high_11
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 24615745 - 24615407
Alignment:
| Q |
18 |
atcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtagtcact |
117 |
Q |
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| T |
24615745 |
atcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtagtcact |
24615646 |
T |
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| Q |
118 |
ggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaattgtttcatgttatatcttgataattgtgaagaga |
217 |
Q |
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| T |
24615645 |
ggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaattgtttcatgttatatcttgataattgtgaagaga |
24615546 |
T |
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| Q |
218 |
aaaacaaagaaatcttaaaactatgagcagacgatctagttgaattgggaagcatttctttaccatctcaattgaatccacgtttctttcttatgttc-- |
315 |
Q |
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| T |
24615545 |
aaaacaaagaaatcttaaaactatgagcagacgatctagttgaattgggaagcatttctttaccatctcaattgaatccacgtttctttcttatgttcta |
24615446 |
T |
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| Q |
316 |
ttcaaaatttgactctattaattattccttatatcttca |
354 |
Q |
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| T |
24615445 |
tacaaaatttgactctattaattattccttatatcttca |
24615407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 109 - 353
Target Start/End: Original strand, 24115638 - 24115895
Alignment:
| Q |
109 |
gtagtcactggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaatt-----------gtttcatgttata |
197 |
Q |
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| T |
24115638 |
gtagtcacagaccttataagtactaactctatatttcagggttagaaggggctgcctagagaaactcctcataattttctcttaattgtttcatgttata |
24115737 |
T |
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| Q |
198 |
tcttgataattgtgaagagaaaaacaaagaaatcttaaaactatgagcagacgatctagttgaattgggaagcatttctttaccatctcaattgaatcca |
297 |
Q |
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| T |
24115738 |
tcttgataattgtgaata-aaaaacagagaaatatctaaaccatgagcagacaatttagttgaattgggaagcatttatttaccat-tcaattgaatcaa |
24115835 |
T |
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| Q |
298 |
cg----tttctttcttatgttcttcaaaatttgactctattaattattccttatatcttc |
353 |
Q |
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| T |
24115836 |
tgttgctttctttcttatgttctacaaaatttgactctattaattattccttatatcttc |
24115895 |
T |
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