View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6975_high_13 (Length: 358)
Name: NF6975_high_13
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 37562848 - 37562673
Alignment:
| Q |
16 |
ttcactgtaaaggtaacctacccttcctcatttctcttcataggcaaacacctctaacaaacttgagaaaattacccnnnnnnnttcaatcttttttctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37562848 |
ttcactgtaaaggtaacctacccttcctcatttctcttcataggcaaacacctctaacaaacttgagaaaattacccaaaaaaattcaatcttttttctt |
37562749 |
T |
|
| Q |
116 |
ctccaccgcttcaggcaaaaatctcaatccagttatgggagatggtatcgcaattcagagcacaaacaattccatc |
191 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37562748 |
ctccaccgcttcagtcaaaaagctcaatccagttatgggagatggtatcgcaattcagagcacaaacaattccatc |
37562673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 37562605 - 37562523
Alignment:
| Q |
259 |
tgacccatgaacaagttttggcttttaaatttgtaactgaatgggtttcattggatagcccttcttctttcgctacttcatct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37562605 |
tgacccatgaacaagttttggcttttaaatttgtaactgaatgggtttcattggataacccttcttctttcgctacttcatct |
37562523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University