View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_high_14 (Length: 348)

Name: NF6975_high_14
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_high_14
NF6975_high_14
[»] chr4 (1 HSPs)
chr4 (146-338)||(8477894-8478082)
[»] chr5 (1 HSPs)
chr5 (279-338)||(19049565-19049623)
[»] chr2 (3 HSPs)
chr2 (267-338)||(31064704-31064774)
chr2 (267-338)||(23083357-23083427)
chr2 (267-335)||(19402619-19402687)
[»] chr7 (3 HSPs)
chr7 (267-338)||(12526105-12526174)
chr7 (267-338)||(21500854-21500924)
chr7 (267-338)||(21498708-21498778)
[»] chr3 (2 HSPs)
chr3 (267-330)||(8897109-8897172)
chr3 (270-328)||(15669549-15669607)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 146 - 338
Target Start/End: Complemental strand, 8478082 - 8477894
Alignment:
Q  146 caaaatcaaaattgcatgcgaatcgatcccaaaaatttgaatagcacagaaaacatattgaatttcaaattcatttttcaaaacttaacaaaattgcatg 245  Q
    ||||||||||||||||||| |||| |||||||||| ||||||| ||| |||| ||||||| |||||| |||||||||||||||| ||||||| |||||||    
T  8478082 caaaatcaaaattgcatgcaaatcaatcccaaaaaattgaataccacggaaaccatattggatttcagattcatttttcaaaacgtaacaaatttgcatg 8477983  T
Q  246 cgaaaatatttatactgtttttataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    | |||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||    
T  8477982 caaaaatatttatac---ttttataatggtatgaattatataatgatgagttttatggtgttgtgcattat-gagtctatacttgaagtccat 8477894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 19049623 - 19049565
Alignment:
Q  279 aattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  19049623 aattatataatgatgagtttt-ttgtgttgtgcattgtcgagtctatactagaagtccat 19049565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 31064774 - 31064704
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||||| ||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||| ||||||    
T  31064774 tataatggtgtgaattatataatgatgagtttt-tggtgatgtgcattgtcaagtctatacttgaagtccat 31064704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 23083427 - 23083357
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||||| ||||||| ||||||| || ||| || || |||||||||||||||| ||||||||| ||||||    
T  23083427 tataatggtgtgaattacataatgaagaattt-atggtattgtgcattgtcgagtatatacttgaagtccat 23083357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 19402619 - 19402687
Alignment:
Q  267 tataatggtatgaa-ttatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtc 335  Q
    ||||||||| |||| |||||||||||| || ||| | ||| |||||||| ||||||||||||||||||||    
T  19402619 tataatggtgtgaaattatataatgattagcttt-tggtgatgtgcattttcgagtctatacttgatgtc 19402687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 12526174 - 12526105
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||||| |||||||||||||| | ||||||    
T  12526174 tataatggtgtgaattatataatgatgagttt--ttgtgatgtgcattatcgagtctatactttaagtccat 12526105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 21500854 - 21500924
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||||||| ||||||||||||||||||||| | ||| || ||||||||||||| |||||||| ||||||    
T  21500854 tataatggtataaattatataatgatgagtttt-tggtgatgcgcattgtcgagtccatacttgaagtccat 21500924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 21498778 - 21498708
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttgatgtccat 338  Q
    ||||||| ||||||||||||||||||||| ||| | ||| |||||| ||| ||||| |||||||| ||||||    
T  21498778 tataatgatatgaattatataatgatgag-tttctagtgatgtgcaatgttgagtccatacttgaagtccat 21498708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 8897109 - 8897172
Alignment:
Q  267 tataatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatacttg 330  Q
    ||||||||| ||||||||||| || |||||||||| ||| | ||||||||||||||||||||||    
T  8897109 tataatggtgtgaattatatactggtgagttttatggtgatatgcattgtcgagtctatacttg 8897172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 15669549 - 15669607
Alignment:
Q  270 aatggtatgaattatataatgatgagttttattgtgttgtgcattgtcgagtctatact 328  Q
    |||||| ||||||||||||||||||| | |||  |||||||||||||||||||||||||    
T  15669549 aatggtgtgaattatataatgatgagctatatgatgttgtgcattgtcgagtctatact 15669607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University