View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_16 (Length: 310)
Name: NF6975_high_16
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 8638913 - 8638611
Alignment:
| Q |
1 |
cgacacaaacacgtaaacaaatataatattttaagaaaataaaagtaattgtatgttg-------tgttaatgtcgtgtcggatatgtcgaacaatcaaa |
93 |
Q |
| |
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| T |
8638913 |
cgacacaaacacgtaaataaatataatattttaagaaaataaaagtaattgtatgttgccacatgtgttaatgtcttgtcggatgtgtcgaacaatcaaa |
8638814 |
T |
|
| Q |
94 |
cacatgtacagagtctaaagtatcgctgttacatactagaacacatacaaatcatgattctatcaaataaacaaggaaaacaatacaacacttggcagga |
193 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8638813 |
cgcatgtacacagtctaaagtatcgctgttacatactagaacacatacaaatcatgattctatcaaataaacaaggaaaacaatacaacact--gcagga |
8638716 |
T |
|
| Q |
194 |
tacaaacatgaaaattt---tacaat--nnnnnnnnncattgcattaagaaaaacatcaagcattcttatttttaacatctgaaggaaatgacttgaacc |
288 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8638715 |
tacaaacatgaaaattttactacaataaaaaaaaaaacattgcattaagaaaaacatcaagcattcttatttttaacatccgaaggaaatgacttgaacc |
8638616 |
T |
|
| Q |
289 |
aaggt |
293 |
Q |
| |
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||||| |
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|
| T |
8638615 |
aaggt |
8638611 |
T |
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