View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_22 (Length: 262)
Name: NF6975_high_22
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 808022 - 807798
Alignment:
| Q |
17 |
catcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacagcaacatcacaa |
116 |
Q |
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| T |
808022 |
catcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacagcaacatcacaa |
807923 |
T |
|
| Q |
117 |
taaccagcacccatattgaaaatgagagcaattttctcacttccactgcccatagtttcttgagaagctttctgttgttgctgtccatataataacgcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
807922 |
taaccagcacccatattgaaaatgagagcaattttctcacttccactgcccatagtttcttgagaagctttctgttgttgctgtccatataataacgcca |
807823 |
T |
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| Q |
217 |
ctgctgttggttcaggcatcaacct |
241 |
Q |
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| T |
807822 |
ctgctgttggttcaggcatcaacct |
807798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 39241671 - 39241450
Alignment:
| Q |
16 |
acatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacagcaacatcaca |
115 |
Q |
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| T |
39241671 |
acatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttatctcggatactcctccagccgtagcagtcacagcaacatcaca |
39241572 |
T |
|
| Q |
116 |
ataaccagcacccatattgaaaatgagagcaattttctcacttccactgcccatagtttcttgagaagctttctgttgttgctgtccatataataacgcc |
215 |
Q |
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| T |
39241571 |
ataaccagcacccatattgaaaatgagagcaactttctcacttccactgcccatagtttcttgaaaagctttatgttgttgctgtgcatataacaatgcc |
39241472 |
T |
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| Q |
216 |
actgctgttggttcaggcatca |
237 |
Q |
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|| ||||||||||||||||||| |
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| T |
39241471 |
acagctgttggttcaggcatca |
39241450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 42927117 - 42927171
Alignment:
| Q |
93 |
gtagcagtcacagcaacatcacaataaccagcacccatattgaaaatgagagcaa |
147 |
Q |
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| T |
42927117 |
gtagcaatgacagcaacatcacaataaccagcatccatattaaaaacgagagcaa |
42927171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 44728125 - 44728174
Alignment:
| Q |
104 |
agcaacatcacaataaccagcacccatattgaaaatgagagcaattttct |
153 |
Q |
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| T |
44728125 |
agcaacatcacaataacccgcgtccatattgaaaatcagagcaattttct |
44728174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 47842796 - 47842748
Alignment:
| Q |
97 |
cagtcacagcaacatcacaataaccagcacccatattgaaaatgagagc |
145 |
Q |
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| T |
47842796 |
cagtcacagcaacatcacaataaccgaaatccatattgaaaatgagagc |
47842748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 44728037 - 44728094
Alignment:
| Q |
16 |
acatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttat |
73 |
Q |
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|||||||||| |||||||||||||||||| || | |||||||||||| |||||||| |
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| T |
44728037 |
acatcatatttccaagcaaatcttctccaccaatagcacttcctgccaacgcttttat |
44728094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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