View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_29 (Length: 228)
Name: NF6975_high_29
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_29 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 91886 - 91659
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91886 |
tcaagacacactttatgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
91787 |
T |
|
| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
91786 |
caaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
91687 |
T |
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| Q |
201 |
tccaaggaggctctattgttgctgaccc |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
91686 |
tccaaggaggctctattgttgctgaccc |
91659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 95193 - 94966
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95193 |
tcaagacacactttatgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattt |
95094 |
T |
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| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
200 |
Q |
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| T |
95093 |
caaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
94994 |
T |
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| Q |
201 |
tccaaggaggctctattgttgctgaccc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
94993 |
tccaaggaggctctattgttgctgaccc |
94966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37154794 - 37154567
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154794 |
tcaagacacactttatgtacacgccatgcgtcaattttaccgtgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
37154695 |
T |
|
| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37154694 |
caaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactggaccatcagcaatagtca |
37154595 |
T |
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| Q |
201 |
tccaaggaggctctattgttgctgaccc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37154594 |
tccaaggaggctctattgttgctgaccc |
37154567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37150583 - 37150810
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
37150583 |
tcaagacacactttatgtacacgccatgcgtcaattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattc |
37150682 |
T |
|
| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
200 |
Q |
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|||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37150683 |
caaaactgcaaatttgtggtccgaaagcctatgtcagaccaacaatgcattgtgaccgcacaaggaagaaaagaaagaacggcaccatcagcaatagtca |
37150782 |
T |
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| Q |
201 |
tccaaggaggctctattgttgctgaccc |
228 |
Q |
| |
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|| ||||||||||||||||||| ||||| |
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| T |
37150783 |
tcgaaggaggctctattgttgccgaccc |
37150810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 37159408 - 37159635
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
37159408 |
tcaagacacactttatgtacacgccatgcgtcaattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattc |
37159507 |
T |
|
| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaagaaataactgcaccatcagcaatagtca |
200 |
Q |
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|
|||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37159508 |
caaaactgcaaatttgtggtccgaaagcctatgtcagaccaacaatgcattgtgaccgcacaaggaagaaaagaaagaacggcaccatcagcaatagtca |
37159607 |
T |
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| Q |
201 |
tccaaggaggctctattgttgctgaccc |
228 |
Q |
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|| ||||||||||||||||||| ||||| |
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| T |
37159608 |
tcgaaggaggctctattgttgccgaccc |
37159635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 37162538 - 37162365
Alignment:
| Q |
1 |
tcaagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattc |
100 |
Q |
| |
|
|||||||||| | || |||||| |||||||||||||||| || || ||||| |||||||| ||||| ||||| ||||||| ||||| ||| || ||| |
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| T |
37162538 |
tcaagacacattatatgtacacaccatgcgtcaattttatcgtgattgtacaatttcaggcaccattgacttcatctttggcgatgcaatatctgttttc |
37162439 |
T |
|
| Q |
101 |
caaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaaggaagaaaaga |
174 |
Q |
| |
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|||||||||| |||| | || ||| || | |||||||||||||||||| || |||||||| |||||||| |
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| T |
37162438 |
caaaactgcacattcttagttaaaaaaccattagaaaaccaacaatgcattgtaactgcacaaggtagaaaaga |
37162365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 46315773 - 46315936
Alignment:
| Q |
2 |
caagacacactttacgtacacgccatgcgtcaattttaccgcgactgtactatttcaggtaccatcgactttgtctttggtaatgcagaatcggtattcc |
101 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||| ||||| || |||| ||| ||||||||||| ||||| ||||||||| || | | || ||| |
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| T |
46315773 |
caagacacactttacgctcacaccatgcgtcaattctaccgtgattgtattatctcaggtaccattgacttcgtctttggtgattccattgctgttctcc |
46315872 |
T |
|
| Q |
102 |
aaaactgcaaattcgtggtccgaaagcctatgttaaaccaacaatgcattgtgaccgcacaagg |
165 |
Q |
| |
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|||| |||| || || ||||||||||| || ||||||||||||||||||||| |||||||| |
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| T |
46315873 |
aaaattgcacttttgtcgtccgaaagccattggaaaaccaacaatgcattgtgactgcacaagg |
46315936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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