View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_high_4 (Length: 687)

Name: NF6975_high_4
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_high_4
NF6975_high_4
[»] chr7 (13 HSPs)
chr7 (19-667)||(27500555-27501206)
chr7 (19-667)||(27515347-27515998)
chr7 (19-667)||(27493897-27494548)
chr7 (79-429)||(27518254-27518600)
chr7 (94-429)||(27388718-27389049)
chr7 (79-429)||(27496772-27497118)
chr7 (244-429)||(27503430-27503611)
chr7 (554-595)||(31341138-31341179)
chr7 (554-627)||(49060484-49060557)
chr7 (36-79)||(27519195-27519238)
chr7 (567-622)||(45777229-45777284)
chr7 (606-655)||(40530434-40530483)
chr7 (509-556)||(47303639-47303684)
[»] chr3 (10 HSPs)
chr3 (510-632)||(24235731-24235855)
chr3 (553-657)||(38462224-38462328)
chr3 (554-634)||(40122799-40122878)
chr3 (552-667)||(24887296-24887411)
chr3 (567-657)||(1816540-1816630)
chr3 (570-664)||(31337417-31337511)
chr3 (568-617)||(33434069-33434119)
chr3 (554-595)||(49587001-49587042)
chr3 (554-594)||(20192692-20192732)
chr3 (554-658)||(44061045-44061149)
[»] chr8 (10 HSPs)
chr8 (152-293)||(282546-282689)
chr8 (152-293)||(633163-633306)
chr8 (152-293)||(818966-819109)
chr8 (554-658)||(10075573-10075677)
chr8 (568-657)||(31862451-31862540)
chr8 (554-622)||(1470914-1470982)
chr8 (554-664)||(4558742-4558852)
chr8 (554-634)||(29973025-29973105)
chr8 (554-622)||(38561670-38561738)
chr8 (554-622)||(42597345-42597413)
[»] chr2 (8 HSPs)
chr2 (554-633)||(10143116-10143195)
chr2 (554-634)||(17952747-17952827)
chr2 (554-657)||(5133716-5133819)
chr2 (557-644)||(9878718-9878805)
chr2 (557-620)||(31740019-31740082)
chr2 (573-655)||(36863650-36863732)
chr2 (554-643)||(28933768-28933857)
chr2 (574-634)||(35485881-35485941)
[»] chr6 (10 HSPs)
chr6 (567-657)||(4006671-4006761)
chr6 (556-633)||(1402942-1403019)
chr6 (553-665)||(2117346-2117458)
chr6 (554-622)||(2514646-2514714)
chr6 (554-621)||(10452419-10452486)
chr6 (553-599)||(30784500-30784546)
chr6 (553-622)||(2735012-2735081)
chr6 (556-596)||(2027490-2027530)
chr6 (555-595)||(3171516-3171556)
chr6 (545-593)||(31583636-31583684)
[»] chr5 (8 HSPs)
chr5 (554-654)||(16889679-16889779)
chr5 (567-622)||(39823179-39823234)
chr5 (568-654)||(15003540-15003626)
chr5 (527-644)||(14295423-14295540)
chr5 (555-620)||(31694463-31694528)
chr5 (554-617)||(35135725-35135788)
chr5 (554-632)||(18704084-18704161)
chr5 (554-594)||(7096213-7096253)
[»] chr1 (12 HSPs)
chr1 (554-633)||(42556678-42556757)
chr1 (510-633)||(17422985-17423108)
chr1 (608-657)||(25479579-25479628)
chr1 (563-631)||(28467356-28467424)
chr1 (573-664)||(4548684-4548775)
chr1 (567-665)||(4622050-4622148)
chr1 (570-599)||(11129205-11129234)
chr1 (567-619)||(15360851-15360903)
chr1 (570-658)||(27738202-27738290)
chr1 (606-662)||(37241840-37241896)
chr1 (573-633)||(45205031-45205091)
chr1 (554-614)||(45999354-45999414)
[»] chr4 (11 HSPs)
chr4 (567-645)||(49085946-49086024)
chr4 (554-615)||(27623579-27623640)
chr4 (605-668)||(29601020-29601083)
chr4 (567-657)||(24929450-24929540)
chr4 (554-596)||(47970262-47970304)
chr4 (567-645)||(55870376-55870454)
chr4 (567-620)||(4071839-4071892)
chr4 (554-595)||(51044544-51044585)
chr4 (555-634)||(24370999-24371079)
chr4 (567-639)||(43372010-43372082)
chr4 (554-622)||(49219083-49219151)
[»] scaffold0590 (1 HSPs)
scaffold0590 (554-596)||(1158-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (554-596)||(2775-2817)
[»] scaffold0116 (1 HSPs)
scaffold0116 (509-550)||(18142-18183)


Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 27501206 - 27500555
Alignment:
Q  19 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctgctcacat--atcttccaagaatcctggctacaactcaacatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||      
T  27501206 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctactcacatgtatcttccaagaatcctggctacaactcaacatata-- 27501109  T
Q  117 gagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacag 216  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |    
T  27501108 gagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagtggagctggaagcctcgtgtggcaggtgttatctgaagg 27501009  T
Q  217 a---acggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 313  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27501008 attaacggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 27500909  T
Q  314 ctagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 413  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500908 ctagttgtgttcttccaaatgcaattggagttgtaagaagaaaaaaaatatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 27500809  T
Q  414 ccaattgtaaagctatggtgatataaagatgtcatgcatgtataagtatgaaaaagaaaaatgaaagaatcataaaatgagataaatatacttacatttg 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500808 ccaattgtaaagctatggtgatataaagctgtcatgcatgtataagtatgaaaaagaaaaatgaaagaatcataaaatgagataaatatacttacatttg 27500709  T
Q  514 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500708 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 27500609  T
Q  614 agttgttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 667  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27500608 agtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 27500555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 27515998 - 27515347
Alignment:
Q  19 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctgctcacat--atcttccaagaatcctggctacaactcaacatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||      
T  27515998 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctactcacatgtatcttccaagaatcctggctacaactcaacatata-- 27515901  T
Q  117 gagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacag 216  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |    
T  27515900 gagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagtggagctggaagcctcgtgtggcaggtgttatctgaagg 27515801  T
Q  217 a---acggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 313  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27515800 attaacggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 27515701  T
Q  314 ctagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 413  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27515700 ctagttgtgttcttccaaatgcaattggagttgtaagaagaaaaaaaatatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 27515601  T
Q  414 ccaattgtaaagctatggtgatataaagatgtcatgcatgtataagtatgaaaaagaaaaatgaaagaatcataaaatgagataaatatacttacatttg 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27515600 ccaattgtaaagctatggtgatataaagctgtcatgcatgtataagtatgaaaaagaaaaatgaaagaatcataaaatgagataaatatacttacatttg 27515501  T
Q  514 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27515500 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 27515401  T
Q  614 agttgttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 667  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27515400 agtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 27515347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 667
Target Start/End: Complemental strand, 27494548 - 27493897
Alignment:
Q  19 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctgctcacat--atcttccaagaatcctggctacaactcaacatatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||      
T  27494548 atgaagttcattccattaggaaccaccaagttctttgtgtaaactttgcttctactcacatgtatcttccaagaatcctggctacaactcaacatata-- 27494451  T
Q  117 gagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacag 216  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |    
T  27494450 gagacacattaataagcaccgttaacagttccatcctaaattcaacaaagaaaggagggagtggagctggaagcctcgtgtggcaggtgttatctgaagg 27494351  T
Q  217 a---acggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 313  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27494350 attaacggataatatggatgatggttatgcttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaa 27494251  T
Q  314 ctagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 413  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27494250 ctagttgtgttcttccaaatgcaattggagttgtaagaagaaaaaaaatatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagtta 27494151  T
Q  414 ccaattgtaaagctatggtgatataaagatgtcatgcatgtataagtatgaaaaagaaaaatgaaagaatcataaaatgagataaatatacttacatttg 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27494150 ccaattgtaaagctatggtgatataaagctgtcatgcatgtataagtatgaaaaaaaaaaatgaaagaatcataaaatgagataaatatacttacatttg 27494051  T
Q  514 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27494050 gataaacaacttataattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctata 27493951  T
Q  614 agttgttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 667  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27493950 agtttttttaatatgctatccaagagagcttacgaaaataagctagaaacagtt 27493897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 79 - 429
Target Start/End: Complemental strand, 27518600 - 27518254
Alignment:
Q  79 tatcttccaagaatcctggctacaactcaacatatatagagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaat 178  Q
    |||| |||||| ||||||||||||||||||||||||  |||||||| |||| ||||| | | || | || |||||||| || |||||||||||||||| |    
T  27518600 tatcatccaaggatcctggctacaactcaacatata--gagacacactaataagcactgtttacagctcaatcctaaactccacaaagaaaggagggagt 27518503  T
Q  179 ggagctggaagcctcgtgtggcaggtgttatctgacagaacggataatatggatgatggttatgct--tgttttctcaaaatccccttccacttcaagta 276  Q
    || |||||||||||  |||||||||| || |||||  ||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  27518502 ggggctggaagccttttgtggcaggtattttctgaaggaatggataatatggatgatggttatgctattgttttctcaaaatctccttccacttcaagta 27518403  T
Q  277 ttgtatcccttcaatcctataggcttgctttgtttaactagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaaga 376  Q
    ||||| |||||||||||   |||||||||||||| ||||  ||||||||| ||| ||||||||||||||||||||||         ||||| ||||||||    
T  27518402 ttgtaacccttcaatccacgaggcttgctttgttcaactccttgtgttctaccagatgcaattggagttgtaagaagaagaaa---atgtt-ggagaaga 27518307  T
Q  377 tcctatatcatgatgaactctaacttacgtaaagttaccaattgtaaagctat 429  Q
    | || |||||||||||||||||||||| |||||||| ||  ||||||||||||    
T  27518306 tactctatcatgatgaactctaacttatgtaaagtttccctttgtaaagctat 27518254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 94 - 429
Target Start/End: Original strand, 27388718 - 27389049
Alignment:
Q  94 ctggctacaactcaacatatatagagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaatggagctggaagcctc 193  Q
    |||||||||||||||||||||  |||||||| |||| ||||| | | || | || |||||||| || |||||||||||||||| |||||||||||||||     
T  27388718 ctggctacaactcaacatata--gagacacactaataagcactgtttacagctcaatcctaaactccacaaagaaaggagggagtggagctggaagcctt 27388815  T
Q  194 gtgtggcaggtgttatctgacagaacggataatatggatgatggttatgct--tgttttctcaaaatccccttccacttcaagtattgtatcccttcaat 291  Q
     |||||||||| || | |||  ||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  27388816 ttgtggcaggtattttttgaaggaatggataatatggatgatggttatgctattgttttctcaaaatctccttccacttcaagtattgtaacccttcaat 27388915  T
Q  292 cctataggcttgctttgtttaactagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaagatcctatatcatgatg 391  Q
    ||   |||||||||||||| ||||  ||||||||| ||| ||||||||||||||||||||||         ||||| ||||||||| || ||||||||||    
T  27388916 ccacgaggcttgctttgttcaactccttgtgttctaccagatgcaattggagttgtaagaagaagaaa---atgtt-ggagaagatactctatcatgatg 27389011  T
Q  392 aactctaacttacgtaaagttaccaattgtaaagctat 429  Q
    |||||||||||| |||||||| ||  ||||||||||||    
T  27389012 aactctaacttatgtaaagtttccctttgtaaagctat 27389049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 79 - 429
Target Start/End: Complemental strand, 27497118 - 27496772
Alignment:
Q  79 tatcttccaagaatcctggctacaactcaacatatatagagacacattaattagcaccgataacggttccatcctaaattcaacaaagaaaggagggaat 178  Q
    |||| |||||| ||||||||||||||||||||||||  |||||||| |||| ||||| | | || |  |  ||||||| || |||||||||||||||| |    
T  27497118 tatcatccaaggatcctggctacaactcaacatata--gagacacactaataagcactgtttacagcgcagtcctaaactccacaaagaaaggagggagt 27497021  T
Q  179 ggagctggaagcctcgtgtggcaggtgttatctgacagaacggataatatggatgatggttatgct--tgttttctcaaaatccccttccacttcaagta 276  Q
    ||||||||||||||  |||||||||| ||  ||||  |||| |||||||||||||| || ||||||  ||||||||||||||| ||||||||||||||||    
T  27497020 ggagctggaagccttttgtggcaggtatttcctgaaggaaccgataatatggatgacggctatgctattgttttctcaaaatctccttccacttcaagta 27496921  T
Q  277 ttgtatcccttcaatcctataggcttgctttgtttaactagttgtgttcttccaaatgcaattggagttgtaagaagnnnnnnnntatgttgggagaaga 376  Q
    ||||| |||||||||||   |||||||||||||| |||| | |||||||| ||| ||||||||||||||||||||||         ||||| ||||||||    
T  27496920 ttgtaacccttcaatccacgaggcttgctttgttcaactcggtgtgttctaccagatgcaattggagttgtaagaagaagaaa---atgtt-ggagaaga 27496825  T
Q  377 tcctatatcatgatgaactctaacttacgtaaagttaccaattgtaaagctat 429  Q
    | || |||||||||||||||||||||| |||||||| ||  ||||||||||||    
T  27496824 tactctatcatgatgaactctaacttatgtaaagtttccctttgtaaagctat 27496772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 429
Target Start/End: Complemental strand, 27503611 - 27503430
Alignment:
Q  244 ttgttttctcaaaatccccttccacttcaagtattgtatcccttcaatcctataggcttgctttgtttaactagttgtgttcttccaaatgcaattggag 343  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||   |||||||||||||| |||| | |||||||| ||| ||||||||||||    
T  27503611 ttgttttctcaaaatctccttccacttcaagtattgtaacccttcaatccacgaggcttgctttgttcaactcggtgtgttctaccagatgcaattggag 27503512  T
Q  344 ttgtaagaagnnnnnnnntatgttgggagaagatcctatatcatgatgaactctaacttacgtaaagttaccaattgtaaagctat 429  Q
    ||||||||||         ||||| ||||||||| || |||||||||||||||||||||| |||||||| ||  ||||||||||||    
T  27503511 ttgtaagaagaagaaa---atgtt-ggagaagatactctatcatgatgaactctaacttatgtaaagtttccctttgtaaagctat 27503430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 595
Target Start/End: Original strand, 31341138 - 31341179
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaact 595  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  31341138 tataagctatttgtataacaaaagataaaataaagtcaaact 31341179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 627
Target Start/End: Original strand, 49060484 - 49060557
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatat 627  Q
    |||||||||| | |||||||||| ||||||| |||||||| || || |||| |||||||||||| |||| ||||    
T  49060484 tataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcatat 49060557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 27519238 - 27519195
Alignment:
Q  36 aggaaccaccaagttctttgtgtaaactttgcttctgctcacat 79  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||    
T  27519238 aggaaccaccaagttcttggtgtagactttgcttctgttcacat 27519195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 622
Target Start/End: Complemental strand, 45777284 - 45777229
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||||||||||||||||||||||||||  ||  ||| || ||||||||||||||    
T  45777284 tataacaaaagataaaattaagtcaaactgttttcatataaactataagttgtttt 45777229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 655
Target Start/End: Complemental strand, 40530483 - 40530434
Alignment:
Q  606 aagctataagttgttttaatatgctatccaagagagcttacgaaaataag 655  Q
    ||||||||||||||||||||| ||||||| | ||| |||| |||||||||    
T  40530483 aagctataagttgttttaataagctatcctaaagaacttatgaaaataag 40530434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 556
Target Start/End: Complemental strand, 47303684 - 47303639
Alignment:
Q  509 atttggataaacaacttataattaagtgtttatagtataagctcttat 556  Q
    ||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  47303684 atttggataaacaactta--attgagtgtttatagtataagatcttat 47303639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 632
Target Start/End: Complemental strand, 24235855 - 24235731
Alignment:
Q  510 tttggataaacaacttataattaagtgtttatagtataagctctt----ataagctatgtgtataacaaaagataaaattaagtcaaactacttatatac 605  Q
    |||||||||||||||||  ||||||||||||||  |||||| |||    ||||| ||| | ||||||||||||||| || ||||||||||| ||  |||     
T  24235855 tttggataaacaactta--attaagtgtttataacataagcacttgtgtataagttatttctataacaaaagataatataaagtcaaactatttgaatat 24235758  T
Q  606 aagctataagttgttttaatatgctat 632  Q
    ||||||||||||||||| ||| |||||    
T  24235757 aagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 657
Target Start/End: Original strand, 38462224 - 38462328
Alignment:
Q  553 ttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaat 652  Q
    ||||||||||| | |||| ||||||||||||| ||||||||||  ||  ||| | |||||||  |||||| ||| ||||||||||| |||||| | ||||    
T  38462224 ttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatggaaat 38462323  T
Q  653 aagct 657  Q
    |||||    
T  38462324 aagct 38462328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 634
Target Start/End: Complemental strand, 40122878 - 40122799
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatcc 634  Q
    |||||||||| |  ||||||||||||||||| ||||||||||  ||  ||| ||||||||||||||||| ||| |||||||    
T  40122878 tataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctataagttgtttttataagctatcc 40122799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 667
Target Start/End: Complemental strand, 24887411 - 24887296
Alignment:
Q  552 cttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaa 651  Q
    |||||||||||| | |||||||| ||||||||| ||||||||||   |  ||| |||||| ||| |||||| ||| |||||||  ||||||||| |  ||    
T  24887411 cttataagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaa 24887312  T
Q  652 taagctagaaacagtt 667  Q
    ||||||  ||||||||    
T  24887311 taagctgaaaacagtt 24887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 657
Target Start/End: Original strand, 1816540 - 1816630
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagct 657  Q
    ||||| |||||||||||| ||||||||||  || | || ||| ||||||||||||| ||| ||||| |  |||||||||  ||||||||||    
T  1816540 tataataaaagataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttatcaaaataagct 1816630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 664
Target Start/End: Complemental strand, 31337511 - 31337417
Alignment:
Q  570 aacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagctagaaaca 664  Q
    ||||||||||||||| ||||||||||  || |||| ||| |||||||||| || ||| ||||  | ||| ||||||  |||||||| ||||||||    
T  31337511 aacaaaagataaaataaagtcaaactgtttttatataagttataagttgtattcataagctaatctagaaagcttatcaaaataaggtagaaaca 31337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 33434119 - 33434069
Alignment:
Q  568 ataacaaaagataaaattaagtcaaactacttatatac-aagctataagtt 617  Q
    ||||||||||||||||| ||||||||||||||  |||| ||||||||||||    
T  33434119 ataacaaaagataaaataaagtcaaactactttcatacaaagctataagtt 33434069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 49587042 - 49587001
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaact 595  Q
    |||||||||| | |||||||||||||||||| ||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaact 49587001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 594
Target Start/End: Complemental strand, 20192732 - 20192692
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaac 594  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  20192732 tataagctatttatataacaaaagataaaataaagtcaaac 20192692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 658
Target Start/End: Complemental strand, 44061149 - 44061045
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaata 653  Q
    |||||||||| | |||| ||||||||||||| | || ||| |  || | || ||||||||||||||||| ||||| ||||  ||||| |||| |||| ||    
T  44061149 tataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgttttcatatgatatcttagagaacttatgaaatta 44061050  T
Q  654 agcta 658  Q
    |||||    
T  44061049 agcta 44061045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 293
Target Start/End: Original strand, 282546 - 282689
Alignment:
Q  152 ctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacagaacggataatatggatgatggttatgc--ttgttt 249  Q
    ||||| || |||||||||||||| | ||| |||||||||||  |||||||| | ||  ||||  |||| ||| | |||||||||||||||||  |||||     
T  282546 ctaaactctacaaagaaaggaggtagtggggctggaagccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttc 282645  T
Q  250 tctcaaaatccccttccacttcaagtattgtatcccttcaatcc 293  Q
    |||||||| | ||||| |||||||| ||  ||||||||||||||    
T  282646 tctcaaaagctccttctacttcaagcatgatatcccttcaatcc 282689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 633306 - 633163
Alignment:
Q  152 ctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacagaacggataatatggatgatggttatgc--ttgttt 249  Q
    ||||| || |||||||||||||| | ||| |||||||||||  |||||||| | ||  ||||  |||| ||| | |||||||||||||||||  |||||     
T  633306 ctaaactctacaaagaaaggaggtagtggggctggaagccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttc 633207  T
Q  250 tctcaaaatccccttccacttcaagtattgtatcccttcaatcc 293  Q
    |||||||| | ||||| |||||||| ||  ||||||||||||||    
T  633206 tctcaaaagctccttctacttcaagcatgatatcccttcaatcc 633163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 819109 - 818966
Alignment:
Q  152 ctaaattcaacaaagaaaggagggaatggagctggaagcctcgtgtggcaggtgttatctgacagaacggataatatggatgatggttatgc--ttgttt 249  Q
    ||||| || |||||||||||||| | ||| ||||||| |||  |||||||| | ||  ||||  |||| ||| | |||||||||||||||||  |||||     
T  819109 ctaaactctacaaagaaaggaggtagtggggctggaacccttttgtggcagttctttcctgatggaacagattacatggatgatggttatgcaattgttc 819010  T
Q  250 tctcaaaatccccttccacttcaagtattgtatcccttcaatcc 293  Q
    |||||||| | ||||| |||||||| ||  ||||||||||||||    
T  819009 tctcaaaagctccttctacttcaagcatgatatcccttcaatcc 818966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 658
Target Start/End: Complemental strand, 10075677 - 10075573
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaa-gtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaat 652  Q
    |||||||||| ||||||| |||| | | |||||| ||||||||| || |||| ||| |||||| | |||| ||| ||||||| |||||||||| ||||||    
T  10075677 tataagctatttgtataataaaa-acataattaaagtcaaactatttttatataagttataagctattttcataagctatcctagagagcttatgaaaat 10075579  T
Q  653 aagcta 658  Q
    ||||||    
T  10075578 aagcta 10075573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 657
Target Start/End: Original strand, 31862451 - 31862540
Alignment:
Q  568 ataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagct 657  Q
    |||||||||||||| || ||||||||||| |    || |||||||||| |||||| ||| | ||||| |||||||||| |||||||||||    
T  31862451 ataacaaaagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaataagct 31862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 622
Target Start/End: Complemental strand, 1470982 - 1470914
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||||||| | ||||| |||||||||||| |||||||| |||||  ||| |||||||||| ||||||    
T  1470982 tataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgtttt 1470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 664
Target Start/End: Original strand, 4558742 - 4558852
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaata 653  Q
    |||||||||| | ||||| |||||||||||| |||| ||| || ||  ||| | |||||||| |||||  ||| ||||||| |||||||||| | |||||    
T  4558742 tataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaata 4558841  T
Q  654 agctagaaaca 664  Q
    | ||| |||||    
T  4558842 aactaaaaaca 4558852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 634
Target Start/End: Original strand, 29973025 - 29973105
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatcc 634  Q
    |||||||||| | | ||||| ||| |||||| ||||||||||| ||  | | ||||||||||||||||| ||| |||||||    
T  29973025 tataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatcc 29973105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 622
Target Start/End: Original strand, 38561670 - 38561738
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||| ||| | |||||||||||||||||| ||||||||||| || |||  |  ||||||||||||||    
T  38561670 tataagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgtttt 38561738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 622
Target Start/End: Original strand, 42597345 - 42597413
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||||||| | |||||||||||||||||| |||| ||| |  ||  || ||||||||||||||||||    
T  42597345 tataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgtttt 42597413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 633
Target Start/End: Original strand, 10143116 - 10143195
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatc 633  Q
    |||||| ||| | |||||||||||||||||||||||||||||  || |||| |||||||||||| |||| ||| ||||||    
T  10143116 tataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctatc 10143195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 634
Target Start/End: Complemental strand, 17952827 - 17952747
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatcc 634  Q
    |||||||||| | |||||||||||||||||| ||||||||||| ||  ||| |||||| ||| |||||| ||| |||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctatcc 17952747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 657
Target Start/End: Original strand, 5133716 - 5133819
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaata 653  Q
    |||||||||| | |||||||||||||||||| |||  |||||  || |||| ||| |||||| |||||| | | | |||| ||||||||||| | |||||    
T  5133716 tataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttcaaaagttatctaagagagcttatggaaata 5133815  T
Q  654 agct 657  Q
    ||||    
T  5133816 agct 5133819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 644
Target Start/End: Complemental strand, 9878805 - 9878718
Alignment:
Q  557 aagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagctt 644  Q
    ||||||| | |||||||||||||||||| || |||||||| || || | | ||||||||||||||| ||  |||||||  ||||||||    
T  9878805 aagctatttctataacaaaagataaaataaactcaaactatttttacatatgctataagttgttttcattcgctatcccggagagctt 9878718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Complemental strand, 31740082 - 31740019
Alignment:
Q  557 aagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtt 620  Q
    ||||||| | |||||| ||||||||||| ||||||||||| ||  ||| |||||||||||||||    
T  31740082 aagctatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgtt 31740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 655
Target Start/End: Complemental strand, 36863732 - 36863650
Alignment:
Q  573 aaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataag 655  Q
    |||||||||||| ||||||||| | || |||| ||| ||||| ||||||| ||| ||||||   ||||||||| |||||||||    
T  36863732 aaaagataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaataag 36863650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 643
Target Start/End: Original strand, 28933768 - 28933857
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagct 643  Q
    |||||||||| | |||||||||||||||||| || ||||| || ||  ||  ||| ||||| ||||||| ||| ||||||| ||||||||    
T  28933768 tataagctatttatataacaaaagataaaatcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagct 28933857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 634
Target Start/End: Original strand, 35485881 - 35485941
Alignment:
Q  574 aaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatcc 634  Q
    ||||||||||| ||||||||||| ||   || ||||||||||||||||| ||| |||||||    
T  35485881 aaagataaaataaagtcaaactatttcattataagctataagttgtttttataagctatcc 35485941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 657
Target Start/End: Original strand, 4006671 - 4006761
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagct 657  Q
    ||||||||| |||||||| |||||||| |  || |||| ||||||||||||||||| ||| |||||||  ||||| ||| |||||||||||    
T  4006671 tataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataagct 4006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 633
Target Start/End: Original strand, 1402942 - 1403019
Alignment:
Q  556 taagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatc 633  Q
    |||||||| | |||||||||||||||||| |||| |||||| ||  ||| ||||||||| ||||||| ||| ||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatc 1403019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 665
Target Start/End: Original strand, 2117346 - 2117458
Alignment:
Q  553 ttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaat 652  Q
    ||||| ||||| | ||| ||||| |||||||  ||||||||||| ||  ||| || |||||||||||||| ||| | ||||| ||||||||||   ||||    
T  2117346 ttatacgctatttctatgacaaaggataaaacaaagtcaaactattttcatataatctataagttgttttcataagttatcctagagagcttattgaaat 2117445  T
Q  653 aagctagaaacag 665  Q
    |||||| ||||||    
T  2117446 aagctaaaaacag 2117458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 622
Target Start/End: Original strand, 2514646 - 2514714
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||||||| | ||||| |||||||||||| ||||||||||| || ||||  ||||||||||| ||||    
T  2514646 tataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagttatttt 2514714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 621
Target Start/End: Complemental strand, 10452486 - 10452419
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttt 621  Q
    |||||||||| | |||||||||| ||||||| || |||||||| ||  ||| ||||||||||||||||    
T  10452486 tataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgttt 10452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 599
Target Start/End: Original strand, 30784500 - 30784546
Alignment:
Q  553 ttataagctatgtgtataacaaaagataaaattaagtcaaactactt 599  Q
    ||||||||| | | |||||||||||||||||| ||||||||||||||    
T  30784500 ttataagctttttctataacaaaagataaaataaagtcaaactactt 30784546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 622
Target Start/End: Original strand, 2735012 - 2735081
Alignment:
Q  553 ttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    ||||||||||||| |||||||||||||||||| |||| ||| || || | || || ||||||| ||||||    
T  2735012 ttataagctatgtctataacaaaagataaaataaagttaaattatttttgtataatctataagctgtttt 2735081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 596
Target Start/End: Complemental strand, 2027530 - 2027490
Alignment:
Q  556 taagctatgtgtataacaaaagataaaattaagtcaaacta 596  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  2027530 taagctatttttataacaaaagataaaataaagtcaaacta 2027490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 555 - 595
Target Start/End: Complemental strand, 3171556 - 3171516
Alignment:
Q  555 ataagctatgtgtataacaaaagataaaattaagtcaaact 595  Q
    ||||||||| | |||||||||||||||||||||||| ||||    
T  3171556 ataagctatttttataacaaaagataaaattaagtcgaact 3171516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 593
Target Start/End: Original strand, 31583636 - 31583684
Alignment:
Q  545 ataagctcttataagctatgtgtataacaaaagataaaattaagtcaaa 593  Q
    |||||| |||||||||||| | |||||||| ||||||||| ||||||||    
T  31583636 ataagcacttataagctatttctataacaagagataaaatgaagtcaaa 31583684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 554 - 654
Target Start/End: Original strand, 16889679 - 16889779
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaata 653  Q
    |||||||||| |  ||||||||||||||| ||||||||||||  || |||| |||||||||| |||||| ||| ||||| | |||||| ||| | |||||    
T  16889679 tataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatggaaata 16889778  T
Q  654 a 654  Q
    |    
T  16889779 a 16889779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 622
Target Start/End: Complemental strand, 39823234 - 39823179
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||||||||||||||| ||||||||||||||  ||| |||||| ||||||||||    
T  39823234 tataacaaaagataaaataaagtcaaactactttcatataagctacaagttgtttt 39823179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 654
Target Start/End: Complemental strand, 15003626 - 15003540
Alignment:
Q  568 ataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataa 654  Q
    ||||||||||||||||| || |||||||   |  ||| ||||||||||| ||||| ||| |||||||||||||||||| | ||||||    
T  15003626 ataacaaaagataaaataaaatcaaactctcttcatataagctataagtggttttcataagctatccaagagagcttatggaaataa 15003540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 644
Target Start/End: Original strand, 14295423 - 14295540
Alignment:
Q  527 taattaagtgtttatagtataagctcttataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaata 626  Q
    |||| ||||| |||||| ||||   ||||| |||||| | |||||||||||||||||| ||||||||||  ||  ||| |||||||||| ||||||  ||    
T  14295423 taatgaagtgattatagcataaatgcttattagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgta 14295522  T
Q  627 tgctatccaagagagctt 644  Q
     |||||||  ||||||||    
T  14295523 agctatcctggagagctt 14295540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 620
Target Start/End: Original strand, 31694463 - 31694528
Alignment:
Q  555 ataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtt 620  Q
    ||||||||||| |||||||||| ||||| | ||||||||||  || ||||||| ||||||||||||    
T  31694463 ataagctatgtctataacaaaacataaactaaagtcaaactgtttttatacaaactataagttgtt 31694528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 617
Target Start/End: Complemental strand, 35135788 - 35135725
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagtt 617  Q
    |||||| ||| | |||||||||||||||||| ||||||||||| ||  ||| ||||||||||||    
T  35135788 tataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 632
Target Start/End: Complemental strand, 18704161 - 18704084
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctat 632  Q
    |||||| ||| | |||||||||||||||| | ||||||| ||| || |||| ||||||||||||||||| ||| |||||    
T  18704161 tataagttatttctataacaaaagataaa-taaagtcaagctatttttatataagctataagttgttttcataagctat 18704084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 594
Target Start/End: Complemental strand, 7096253 - 7096213
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaac 594  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 554 - 633
Target Start/End: Complemental strand, 42556757 - 42556678
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatc 633  Q
    |||||| ||| | ||| ||||||||| |||| || ||||||||||| |||| ||||||||||||||||| ||| ||||||    
T  42556757 tataagttatttctatgacaaaagatgaaataaaatcaaactacttttatataagctataagttgttttcataagctatc 42556678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 633
Target Start/End: Complemental strand, 17423108 - 17422985
Alignment:
Q  510 tttggataaacaacttataattaagtgtttatagtataagctct-tataagctatgtgtataacaaaa-gataaaattaagtcaaactacttatatacaa 607  Q
    ||||||||||||||  ||||||||| | ||||| |||||| | | |||||||| | | |||||||||| |||||||| ||||||| ||  ||  ||| ||    
T  17423108 tttggataaacaac--ataattaagcgcttataatataagttatgtataagctttttctataacaaaacgataaaataaagtcaagctgatttcatataa 17423011  T
Q  608 gctataagttgttttaatatgctatc 633  Q
    ||||||||||||||| ||||||||||    
T  17423010 gctataagttgttttcatatgctatc 17422985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 657
Target Start/End: Original strand, 25479579 - 25479628
Alignment:
Q  608 gctataagttgttttaatatgctatccaagagagcttacgaaaataagct 657  Q
    ||||||||||||||| ||| ||||||| |||||||||| |||||||||||    
T  25479579 gctataagttgttttcataagctatcctagagagcttatgaaaataagct 25479628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 631
Target Start/End: Complemental strand, 28467424 - 28467356
Alignment:
Q  563 tgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgcta 631  Q
    |||||||||||||||||||||| |||||||| || ||  ||| |||||| |||||||||| ||| ||||    
T  28467424 tgtgtataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagcta 28467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 664
Target Start/End: Original strand, 4548684 - 4548775
Alignment:
Q  573 aaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagctagaaaca 664  Q
    |||||||||||| ||||||||||  || ||||||||  ||||| |||||| ||| ||||||   ||||||||  |||||||||||| |||||    
T  4548684 aaaagataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagctatcttggagagcttcagaaaataagctaaaaaca 4548775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 665
Target Start/End: Original strand, 4622050 - 4622148
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagctagaaacag 665  Q
    ||||||||||||| |||| || |||||||  ||  ||| |||||||||| |||||  ||||||||||   ||||||||  |||||||||||| ||||||    
T  4622050 tataacaaaagatcaaatgaattcaaactcttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacag 4622148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 599
Target Start/End: Original strand, 11129205 - 11129234
Alignment:
Q  570 aacaaaagataaaattaagtcaaactactt 599  Q
    ||||||||||||||||||||||||||||||    
T  11129205 aacaaaagataaaattaagtcaaactactt 11129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 15360851 - 15360903
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgt 619  Q
    |||||||||||||||||| ||||||||||  ||  ||| ||||||||||||||    
T  15360851 tataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 27738290 - 27738202
Alignment:
Q  570 aacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagcta 658  Q
    ||||||||||||||| |||||||| |  ||  ||| ||||||||| ||||||| ||| ||||| || ||||||||| | | ||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagctatacaggagagcttatggatataagcta 27738202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 662
Target Start/End: Complemental strand, 37241896 - 37241840
Alignment:
Q  606 aagctataagttgttttaatatgctatccaagagagcttacgaaaataagctagaaa 662  Q
    |||||| |||||||||| ||| | ||||| |||||||||| ||||||||||| ||||    
T  37241896 aagctagaagttgttttcataagatatcctagagagcttatgaaaataagctggaaa 37241840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 633
Target Start/End: Original strand, 45205031 - 45205091
Alignment:
Q  573 aaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatc 633  Q
    |||||||||||| ||||||||||| ||  ||| |||||| |||||||||| ||| ||||||    
T  45205031 aaaagataaaataaagtcaaactatttccatataagctagaagttgttttcataagctatc 45205091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 45999414 - 45999354
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataa 614  Q
    |||||||||| | ||||||||||||||| || |||||||||| |||  ||| |||||||||    
T  45999414 tataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 645
Target Start/End: Original strand, 49085946 - 49086024
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagctta 645  Q
    |||||||||||||||||| | ||||||||| ||  ||||||| ||||||||||||| ||| |||| |  ||||||||||    
T  49085946 tataacaaaagataaaataatgtcaaactattttcatacaagttataagttgttttcataagctaccttagagagctta 49086024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 615
Target Start/End: Original strand, 27623579 - 27623640
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataag 615  Q
    |||||| ||| |||||||||||||||||||| ||||||||||| ||  ||| ||||||||||    
T  27623579 tataagatatttgtataacaaaagataaaataaagtcaaactattttaatataagctataag 27623640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 668
Target Start/End: Complemental strand, 29601083 - 29601020
Alignment:
Q  605 caagctataagttgttttaatatgctatccaagagagcttacgaaaataagctagaaacagttg 668  Q
    ||||||||||  |||||| ||||||||||| ||||| |||| |||||||||||  |||||||||    
T  29601083 caagctataatctgttttcatatgctatcctagagaacttatgaaaataagctgaaaacagttg 29601020  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 657
Target Start/End: Original strand, 24929450 - 24929540
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagcttacgaaaataagct 657  Q
    |||||||||||||||||| ||||| ||||  ||  ||| ||||||||||||||||| |||  || | | |||||||||| | |||||||||    
T  24929450 tataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactctactagagagcttatggaaataagct 24929540  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 47970262 - 47970304
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaacta 596  Q
    |||||||||| | |||||||||||||||||| |||||||||||    
T  47970262 tataagctatttctataacaaaagataaaatgaagtcaaacta 47970304  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 645
Target Start/End: Complemental strand, 55870454 - 55870376
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagagagctta 645  Q
    ||||||||||||| |||| ||||||||||  ||  | | ||||||||||||||||| ||| ||||  ||||||||||||    
T  55870454 tataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagctaatcaagagagctta 55870376  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 620
Target Start/End: Original strand, 4071839 - 4071892
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtt 620  Q
    |||||||||||||||||| |||||||| || ||  ||| |||||||||||||||    
T  4071839 tataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 51044585 - 51044544
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaact 595  Q
    |||||||||| | |||||||||||||||||| ||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaact 51044544  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 555 - 634
Target Start/End: Complemental strand, 24371079 - 24370999
Alignment:
Q  555 ataagctatgtgtataac-aaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatcc 634  Q
    ||||||||| | |||||| |||||||||||| || ||||| | ||| || | ||||||||||||||||| ||| |||||||    
T  24371079 ataagctatttctataaccaaaagataaaataaattcaaattgcttttacaaaagctataagttgttttcataagctatcc 24370999  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 639
Target Start/End: Complemental strand, 43372082 - 43372010
Alignment:
Q  567 tataacaaaagataaaattaagtcaaactacttatatacaagctataagttgttttaatatgctatccaagag 639  Q
    ||||||||||||||||||  |||||||||  || |||| |||||||||  || ||| ||| ||||||||||||    
T  43372082 tataacaaaagataaaatacagtcaaactgtttttatataagctataaactgatttcataagctatccaagag 43372010  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 622
Target Start/End: Original strand, 49219083 - 49219151
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaactacttatatacaagctataagttgtttt 622  Q
    |||||| ||| | |||||||||| ||||||| |||||||| || ||  ||| |||||||||||||||||    
T  49219083 tataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgtttt 49219151  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 596
Target Start/End: Complemental strand, 1200 - 1158
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaacta 596  Q
    |||||||||| | |||||||||||||||||| |||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaacta 1158  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 2775 - 2817
Alignment:
Q  554 tataagctatgtgtataacaaaagataaaattaagtcaaacta 596  Q
    |||||||||| | |||||||||||||||||| |||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaacta 2817  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 18183 - 18142
Alignment:
Q  509 atttggataaacaacttataattaagtgtttatagtataagc 550  Q
    |||||||||| ||||||||||||||||| |||||| ||||||    
T  18183 atttggataatcaacttataattaagtgcttatagcataagc 18142  T

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