View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_5 (Length: 609)
Name: NF6975_high_5
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 35995190 - 35994614
Alignment:
| Q |
18 |
caccacccacctccgactccaaaaacccctccgattccgactccgactcatcttccgacgcagaattagaaaccccccaagaagacctcgatatcgaatc |
117 |
Q |
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| T |
35995190 |
caccacccacctccgactccaaaaacccctccgattccgactccgactcatcttccgacgcagaatcagaaaccccccaagaagacctcgatatcgaatc |
35995091 |
T |
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| Q |
118 |
ttatctcaactcattcatcgcccaaaacaccgaagcaccagtctcagactccgaattcgacccagaacaaaacttcaaagacgtaatcgaagcttatcat |
217 |
Q |
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| T |
35995090 |
ttatctcaactcattcatcgcccaaaacaccgaagcaccagtcccagactccgaattcgacccagaacaaaacttcaaaggcgtaatcgaagcttatcat |
35994991 |
T |
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| Q |
218 |
tccgaaaaagttgaaaaatactacgagnnnnnnnttcgtcgcaagattaaacatcgtaacccgtttgattttccacctgattatgagaattggaaagaag |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35994990 |
tccgaaaaagttgaaaaatactacgaaaaaaaaattcgtcgcaaggttcaacatcataacccgtttgattttccacctgattatgagaattggaaagaag |
35994891 |
T |
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| Q |
318 |
aagatttgagagagctttgggataatgggaataacaccattactggtactggttgggaccctgcttttgctacgcctgaggaatgggattatgtgaagtg |
417 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35994890 |
aagacttgagagagctttgggataatgggaataacaccattactggtactggttgggaccctgctttggctacgcctgaggaatgggattatgtgaagtg |
35994791 |
T |
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| Q |
418 |
gaagcattataagggacaagatgttcctattgctcctttttatcttccttataggaaacctattcctcctgtacctactaaccattctgttattaaaggt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
35994790 |
gaagcattataagggacaagatgttcctattgctcctttttatcttccttataggaaacctattcctcctgtacctactaatcattctgctattaaaggt |
35994691 |
T |
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| Q |
518 |
cctagagatgttattgaagaattggataggattgaagaggttctcaaatgggttagctatgtttttgaagatggtag |
594 |
Q |
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|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35994690 |
cctaaaggtgttattgaagaattggataggattgaagagtttctcaaatgggttagctatgtttttgaagatggtag |
35994614 |
T |
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