View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_high_8 (Length: 473)
Name: NF6975_high_8
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 21 - 461
Target Start/End: Original strand, 7760241 - 7760681
Alignment:
| Q |
21 |
gggatcactgaaatggtgtcatcagttggtcattcttgtgagaaaagtgcagacttgttgtcacagttcatgagttacaaggcttctggagcttgtcctg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760241 |
gggatcactgaaatggtgtcatcagttggtcattcttgtgagaaaagtgcagacttgttgtcacagttcatgagttacaaggcttctggagcttgtcctg |
7760340 |
T |
|
| Q |
121 |
atgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttcaaaatcaggnnnnnnncc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7760341 |
atgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttcaaaatcaggtttttttcc |
7760440 |
T |
|
| Q |
221 |
ttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagt |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760441 |
ttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagt |
7760540 |
T |
|
| Q |
321 |
agagattgtgttaattgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttt |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760541 |
agagattgtgttaattgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttt |
7760640 |
T |
|
| Q |
421 |
tagcattaggaaatggtggaattagaatggggtttgatatt |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760641 |
tagcattaggaaatggtggaattagaatggggtttgatatt |
7760681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 247 - 461
Target Start/End: Original strand, 28959881 - 28960095
Alignment:
| Q |
247 |
ttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgattt |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28959881 |
ttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgattt |
28959980 |
T |
|
| Q |
347 |
ggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttttagcattaggaaatggtggaattaga |
446 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28959981 |
ggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttttagcattaggaaatggtggaattaga |
28960080 |
T |
|
| Q |
447 |
atggggtttgatatt |
461 |
Q |
| |
|
||||||||||||||| |
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| T |
28960081 |
atggggtttgatatt |
28960095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 27 - 461
Target Start/End: Original strand, 52953370 - 52953807
Alignment:
| Q |
27 |
actgaaatggtgtcatcagttggtcattcttgtgagaaaagtgcagacttgttgtcacagttcatgagttacaaggcttctggagcttgtcctgatgatt |
126 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||| | | || |||||||| |||| |||| |||||| | | |||| ||||| ||||||| |
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| T |
52953370 |
actgaaatggtttcatctgtgggtcattcttgtgagaaatcttctgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgatt |
52953469 |
T |
|
| Q |
127 |
ggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttca--------aaatcaggnnnnnnn |
218 |
Q |
| |
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||||| | || |||||| |||| | ||| |||||||||||||||||||||||||||||||| | ||| ||||||| |||| | |
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| T |
52953470 |
ggagttttgcacagaaattgatttcgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaatctgtttcttctaaggtaaatta--tcttcat |
52953567 |
T |
|
| Q |
219 |
ccttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattga |
318 |
Q |
| |
|
|||||||| ||| |||||||||||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| |
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|
| T |
52953568 |
ccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattga |
52953667 |
T |
|
| Q |
319 |
gtagagattgtgttaattgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgt |
418 |
Q |
| |
|
||||| ||| | |||| ||||||||||||| ||| | |||||||||| || ||||| ||||| | |||||| ||||||||| | ||||||||||| |
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| T |
52953668 |
atagaggttgcatgcattgctttgatttggttaatgg---atatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
52953764 |
T |
|
| Q |
419 |
tttagcattaggaaatggtggaattagaatggggtttgatatt |
461 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
52953765 |
tttggcattaggaaatggtggaattagaataggatttgatatt |
52953807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 234 - 461
Target Start/End: Complemental strand, 31903943 - 31903719
Alignment:
| Q |
234 |
ctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgtta |
333 |
Q |
| |
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|||||||| ||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||| | ||| | |
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| T |
31903943 |
ctttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgc |
31903844 |
T |
|
| Q |
334 |
attgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttttagcattaggaaa |
433 |
Q |
| |
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|||| ||||||||||||| |||| |||||||||| || ||||| ||||| | |||||| ||||||||| | |||||||||||||| ||||||||||| |
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| T |
31903843 |
attgctttgatttggttaatggtt---atgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgttttggcattaggaaa |
31903747 |
T |
|
| Q |
434 |
tggtggaattagaatggggtttgatatt |
461 |
Q |
| |
|
||||||||||||||| || ||||||||| |
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| T |
31903746 |
tggtggaattagaataggatttgatatt |
31903719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 262 - 461
Target Start/End: Original strand, 31673624 - 31673820
Alignment:
| Q |
262 |
ttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgatttggttagtggtggaaa |
361 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||| | ||| | |||| ||||||||||||| |||| | |
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|
| T |
31673624 |
ttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggttaatggtt---a |
31673720 |
T |
|
| Q |
362 |
tgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgttttagcattaggaaatggtggaattagaatggggtttgatatt |
461 |
Q |
| |
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||||||||| || ||||| ||||| | |||||| ||||||||| | |||| ||||||||| |||||||||||||||||||||||||| || ||||||||| |
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| T |
31673721 |
tgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgctgatgttttggcattaggaaatggtggaattagaataggatttgatatt |
31673820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 31904063 - 31903981
Alignment:
| Q |
120 |
gatgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactgtttc |
202 |
Q |
| |
|
|||||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||||||||| | ||| ||||||| |
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| T |
31904063 |
gatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttttgctaaatctgtttc |
31903981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 31922078 - 31921956
Alignment:
| Q |
234 |
ctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgtta |
333 |
Q |
| |
|
|||||||| ||| || |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||| | ||| | |
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|
| T |
31922078 |
ctttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaataggggttgcatgc |
31921979 |
T |
|
| Q |
334 |
attgttttgatttggttagtggt |
356 |
Q |
| |
|
|||| ||||||||||||| |||| |
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|
| T |
31921978 |
attgctttgatttggttaatggt |
31921956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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