View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_11 (Length: 480)
Name: NF6975_low_11
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 38246833 - 38246355
Alignment:
| Q |
1 |
tcattcatgttttattcgaatgctcgagtgctgtgcaagtttggaatgccgtgaatttatgggataagattgatcgtgtgcttcgtcaggattataatat |
100 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246833 |
tcattcatgttttattggaatgcttgagtgctgtgcaagtttggcatgccgtgaatttatgggataagattgatcgtgtgcttcgtcaggattataatat |
38246734 |
T |
|
| Q |
101 |
gaattatgttatttttactttgtagcaacagcttgctccaatacagagtgaacattttgcagcaatactatggagcctatgggagcacagaaacctgaaa |
200 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38246733 |
gaattctgttatttttactttgtagcaacaacttactccaatacagagtgaaaattttgcagcaatactatggagcctatgggaacacagaaacctgaaa |
38246634 |
T |
|
| Q |
201 |
ctttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246633 |
ctttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtg |
38246534 |
T |
|
| Q |
301 |
taactccctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccagcccctagaaggtataaataaaaaatagatgcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
38246533 |
taactccctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccggcccctagaaggtataaatgaaaaatagatgcctc |
38246434 |
T |
|
| Q |
401 |
gttctcctcgtcgcttaataaggtaggactcggaatgtcttagaggcgaagagggtaattttatgcttgcaaaaagtac |
479 |
Q |
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| T |
38246433 |
gttctcctcgtcgcttaataaggtaggacttggaatgtcttagaggcgaagagggtaattttatgcttgcaaaaagtac |
38246355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 9170817 - 9170556
Alignment:
| Q |
2 |
cattcatgttttattcgaatgctcgagtgctgtgcaagtttggaatgccgtgaatttatgggataagattgatcgtgtgcttcgtcaggattataatatg |
101 |
Q |
| |
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||||||||||||||| |||| ||| ||||| ||||||||| | || |||||||||| ||| |||| |||| | |||| || ||||||||||||| |
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| T |
9170817 |
cattcatgttttatttgaatactcaagtgccttgcaagtttagcgtgtagtgaatttataggacaagaatgataaagcgcttagttgggattataatatg |
9170718 |
T |
|
| Q |
102 |
aattatgttatttttactttgtagcaaca-gcttgctccaatacagagtgaacattttgcagcaatactatggagcctatgggagcacagaaacctgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||| | | |||||||| ||| |
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| T |
9170717 |
aattatgttatttttactttgttgcaacaagcttactccaatgcagagtgaccattttgtagcaatactatggagcctatggaaacgtagaaacctaaaa |
9170618 |
T |
|
| Q |
201 |
ctttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatgga |
262 |
Q |
| |
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|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9170617 |
ctttggcaacaaactagctgcactaatgtgcaagttatagagcgtgcaaagtagttgatgga |
9170556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 140 - 311
Target Start/End: Original strand, 12226273 - 12226444
Alignment:
| Q |
140 |
aatacagagtgaacattttgcagcaatactatggagcctatgggagcacagaaacctgaaactttggcaacaaactaacgagactaatgtgcaggttata |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| | | |||||||||||||| |||||| |
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|
| T |
12226273 |
aatacagagtgaacattttgcagcaatactatggagcctatgaaattgcagaaacctgaaacttcggcaacaaattgaggagactaatgtgcatgttata |
12226372 |
T |
|
| Q |
240 |
gagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctct |
311 |
Q |
| |
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||| ||| ||| |||||||||| ||| ||||| || || | ||||| | |||||||| |||||||||| |
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| T |
12226373 |
gagtgtgtgaagcagttgatggaagaaaagagacgcgcgaaaattattcgctcaggtagtgcaactccctct |
12226444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 12224086 - 12224211
Alignment:
| Q |
219 |
gagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctg |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| || ||||||| ||| ||||| ||||| | |||| ||| |||||||| || ||||| |
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| T |
12224086 |
gagactaatgtgcaggttatatagcgtgcaaagtatttgatggaaga-tggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctg |
12224184 |
T |
|
| Q |
319 |
atccacatgggccgactcttatagctt |
345 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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| T |
12224185 |
atccacatgggccgtctcttatagctt |
12224211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 12223910 - 12224079
Alignment:
| Q |
2 |
cattcatgttttattcgaatgctcgagtgctgtgcaagtttggaatgccgtgaatttatgggataa----gattgatcgtgtgcttcgtcaggattataa |
97 |
Q |
| |
|
||||||||||||||| ||||| || || |||||||||||| ||| || |||||||||||||| |||||| ||| ||||| ||| |||||||| |
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| T |
12223910 |
cattcatgttttattggaatgtctgactgtcgtgcaagtttggtgtgcggtaaatttatgggataattaagattgacagtgcgcttcatcaagattataa |
12224009 |
T |
|
| Q |
98 |
tatgaattatgttatttttactttgtagcaacagcttgctccaatacagagtgaacattttgcagcaata |
167 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| || ||| ||| ||||||||||||||| ||||||| |
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|
| T |
12224010 |
tatggattatgttatttttactttgttgcaacaaattactctaatgtagagtgaacattttgtagcaata |
12224079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 475
Target Start/End: Original strand, 32944733 - 32944900
Alignment:
| Q |
308 |
ctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccagcccctagaaggtataaataaaaaatagatgcctcgttctcc |
407 |
Q |
| |
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||||| || ||||||||| ||| ||||| ||| | ||| ||| ||||| ||||||| | |||||||||||||||| || ||| ||| || | ||| | |
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| T |
32944733 |
ctctaattttgatccacaggggtcgacttttacaactttgtactaatggataaaaccgactcctagaaggtataaatgcaatatatatgtcttgatcttc |
32944832 |
T |
|
| Q |
408 |
tcgtcgcttaataaggtaggactcggaat--gtcttagaggcgaagagggtaattttatgcttgcaaaaa |
475 |
Q |
| |
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| ||||||||||||||||||||| |||| ||||||||| | |||| || ||| |||||||||||||| |
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|
| T |
32944833 |
ttgtcgcttaataaggtaggactttgaatgcgtcttagagac--agagtgtgattatatgcttgcaaaaa |
32944900 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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