View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_15 (Length: 402)
Name: NF6975_low_15
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 3376571 - 3376962
Alignment:
| Q |
1 |
cctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaatggttttgttc |
100 |
Q |
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| T |
3376571 |
cctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaatggttttgttc |
3376670 |
T |
|
| Q |
101 |
catattcgactttgctcaaagcagacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtgagaatttcaa |
200 |
Q |
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| T |
3376671 |
catattcgactttgctcaaagcaaacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtgagaatttcaa |
3376770 |
T |
|
| Q |
201 |
agaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacaccaccttgtgag |
300 |
Q |
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| T |
3376771 |
agaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacaccaccttgtgag |
3376870 |
T |
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| Q |
301 |
gacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgt |
392 |
Q |
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| T |
3376871 |
gacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgatgt |
3376962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 393
Target Start/End: Original strand, 2372397 - 2372483
Alignment:
| Q |
307 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgtc |
393 |
Q |
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| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtc |
2372483 |
T |
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