View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_17 (Length: 388)
Name: NF6975_low_17
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32164868 - 32164486
Alignment:
| Q |
1 |
cgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttattattgactctcgagctagacaatcttgct |
100 |
Q |
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| T |
32164868 |
cgtttctttatattaagtaaactcttagagtcaagtcttcaagtcgagtatatgaaagctcaatgagttattattgactctcgagctagacaatcttgct |
32164769 |
T |
|
| Q |
101 |
tctaccacaaggccatttactaactctgctgatcttttggtcactttacctcctcggacccatcagctcctgccaagctcttcgattcttatgcctgaac |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
32164768 |
tctactacaaggccatttactaactctgctgatcttttggtcactttacctcctcgaacccatcagcttctgccaagctcttcgaatcttatgcctgaac |
32164669 |
T |
|
| Q |
201 |
ggttatctccagctttacaagactcaatttcagaacatgcacatctgcggtagggtgattataaaaccagtccagctgcttgttaagaaggtaatttttc |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164668 |
ggttatctccagctttacaagactcattttcagaacatgcacatctccggtagggtgattataaaaccagtccagctgcttgttaagaaggtaatttttc |
32164569 |
T |
|
| Q |
301 |
tttatgatcacacacgatcatgaaaaaagtagatatgatcaaactgccacattgacatgtgtagtattgttgatgtccatctc |
383 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32164568 |
tttatgatcacacacgatcatgagcaaagtagatatgatcaaactgccacattgacatgtgtagtattgttgacgtccatctc |
32164486 |
T |
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