View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_19 (Length: 368)
Name: NF6975_low_19
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 4751270 - 4751608
Alignment:
| Q |
15 |
cattatttgaaaacatagtttgtatgctatcttagccaagttttctttagtgaagaattctttcactggcgtgtgaggacatccactgctaagttttcta |
114 |
Q |
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| T |
4751270 |
cattatttgaaaacatagtttgtatgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccactgctaagttttcta |
4751369 |
T |
|
| Q |
115 |
tatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgca |
214 |
Q |
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| T |
4751370 |
tatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgca |
4751469 |
T |
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| Q |
215 |
agtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggtttgttctaacataatgtcttaaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4751470 |
agtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggtttgttctaacgtaatgtcttaaat |
4751569 |
T |
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| Q |
315 |
ttttatcatttccaagtaccacaaagcaccgcatttgat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4751570 |
ttttatcatttccaagtaccacaaagcaccgcatttgat |
4751608 |
T |
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