View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_2 (Length: 790)
Name: NF6975_low_2
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_2 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 648; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 16 - 790
Target Start/End: Original strand, 50506950 - 50507730
Alignment:
| Q |
16 |
acatcagaacaactatagtggttaatggaactcaacaaaaattagttagttacttccgtacaaa---cttacttttacttagtttataaagatgactatt |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50506950 |
acatcagaacaattatagtggttaatggaactcaacaaaaattagttagttactcccgtacaaattacttacttttacttagtttataaagatgactatt |
50507049 |
T |
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| Q |
113 |
gttagcctagtcttaagtttatgttatttacggtttaaataaatgatattttcttttaaaaaatacannnnnnnnnnattaggagtttgtatttaatatt |
212 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50507050 |
gttagcctagccttaagtttatgttatttacggtttaaataaatgatattttcttttaaaaaatacatttttttt--attaggagtttgtatttaatatt |
50507147 |
T |
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| Q |
213 |
tgagttggatctccaatttttaatattgaactattctatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcagccagtctatacgtga |
312 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50507148 |
tgagttggatctccaatttttaatattgaactatgctatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccagtctatacgtga |
50507247 |
T |
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| Q |
313 |
tttgttggaaataggctaggtgaaaaagcaagagattgtgcctaggtcgtttgcnnnnnnn--atcgtacctcgtagcattttcctttaatatttgatag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50507248 |
tttgttggaaataggctaggtgaaaaagcaagagattgtgcctaggtcgtttgctttttttttatcgtacctcgtagcattttcctttaatatttgatag |
50507347 |
T |
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| Q |
411 |
ttctgacaatgatcacaatttactataggaagagcagcatatctgggaaatgagaagagaggacttaacacaaaaggcttccatgtctaactccacgggt |
510 |
Q |
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| T |
50507348 |
ttctgacaatgatcacaatttactataggaagagcagcatatccgggaaacgagaagagaggacttaacacaaaaggcttccatgtctaactccacgggt |
50507447 |
T |
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| Q |
511 |
cgtataacacgatctaagagttcaacccagaagttcaactctttcagtgtaggttcttcttctagagagagggaag---ataaggatccttcttgtttgg |
607 |
Q |
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| T |
50507448 |
cgtataacacgatctaagagttcaacccagaagttcaactctttcagtgtaggttcttcttctagagagagggaagataataaggatccttcttgtttgg |
50507547 |
T |
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| Q |
608 |
tgtctactagactcataactgttaaccctaaggttcagaagaatcctaatttcactaagcaacttggttttgatgatggtggaaagagcaatagggatga |
707 |
Q |
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| T |
50507548 |
tgtctactagactcataactgttaaccctaaggttcagaagaatcctgatttcactaagcaacttggttttgatgatggtgaaaagagcaatagggatca |
50507647 |
T |
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| Q |
708 |
aatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcggaaccattgaagt |
790 |
Q |
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| T |
50507648 |
aatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcggaaccattgaagt |
50507730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 662 - 790
Target Start/End: Original strand, 50475231 - 50475359
Alignment:
| Q |
662 |
ctaagcaacttggttttgatgatggtggaaagagcaatagggatgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaaga |
761 |
Q |
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| T |
50475231 |
ctaagcaacttgtttttgatgatggtgaagagaccaatagggatggaataattagccttgatttgaaagaaggatgccgaagaatgtcactatataaaga |
50475330 |
T |
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| Q |
762 |
acctctggctttgtcggaaccattgaagt |
790 |
Q |
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| T |
50475331 |
accgccggctttgtcggaaccattgaagt |
50475359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 12704730 - 12704673
Alignment:
| Q |
44 |
aactcaacaaaaattagttagttacttccgtacaaacttacttttacttagtttataa |
101 |
Q |
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| T |
12704730 |
aactcaacacaagttagttagttcctaccatacaaacttacttttacttaatttataa |
12704673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 586 - 790
Target Start/End: Complemental strand, 10783881 - 10783677
Alignment:
| Q |
586 |
gataaggatccttcttgtttggtgtctactagactcataactgttaaccctaaggttcagaagaatcctaatttcactaagcaacttggttttgatgatg |
685 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||| |
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| T |
10783881 |
gataagaatccttcttgtttggtgtctactagactcacaactgttaaccctaacgttcggaagaatcctgattttactaagcaacttggttttgatgatg |
10783782 |
T |
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| Q |
686 |
gtggaaagagcaatagggatgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcggaaccatt |
785 |
Q |
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||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783781 |
gtgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcaccagataaagaacctctggctttgtcggaaccatt |
10783682 |
T |
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| Q |
786 |
gaagt |
790 |
Q |
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| T |
10783681 |
gaagt |
10783677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 10784541 - 10784098
Alignment:
| Q |
16 |
acatcagaacaactatagtggttaatggaactcaacaaaaattagttagttacttccgtacaaacttactttt--------acttagtttataaagatga |
107 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||| |
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| T |
10784541 |
acatcagaacaattatagtggttaatgaagctcaacaaaaactagttagttactcccatacaaacttactttttacttattacttagtttataaagatga |
10784442 |
T |
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| Q |
108 |
ctattgttagcctagtcttaagtttatgttatttacggtttaaataaatgatattttcttttaaaaaatacannnnnnnnnnattaggagtttgtattta |
207 |
Q |
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| T |
10784441 |
ctattgtaagcctaaccttgattttatgttatttgcagtttaaataaatgataattccttttaaaaaaaaatacatttttatatcaggagtccgtatata |
10784342 |
T |
|
| Q |
208 |
atatttgagttggatctccaatttttaatattgaactattctatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcagccagtctata |
307 |
Q |
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| T |
10784341 |
atatttgagcgggatctccaatttttaatattgagctatgctatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccaattttta |
10784242 |
T |
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| Q |
308 |
cgtgat-ttgttggaa-ataggctaggtgaaaaagcaagagattgtgc----ctaggtcgtttgcnnnnnnnatcgtacctcgtagcattttcctttaat |
401 |
Q |
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| T |
10784241 |
----atattgttgtaataaaggctaggtaaaaaagcaagagattgtgcctagctaggtcgtttgc----tttatcatacctcatagcattttcctttaat |
10784150 |
T |
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| Q |
402 |
atttgatagttctgacaatgatcacaatttactataggaagagcagcatatc |
453 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
10784149 |
atttgatagttctgacaatgatcacaatttactacaggaggagcaacatatc |
10784098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 457 - 593
Target Start/End: Complemental strand, 10784064 - 10783925
Alignment:
| Q |
457 |
gaaatgagaagagaggacttaacacaaaaggcttccatgtctaactccacgggtcgtataacacgatctaagag---ttcaacccagaagttcaactctt |
553 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
10784064 |
gaaatgagaagagaggacttaactaaaaaagattccatgtctaactccacgggtcgtataacacgatctaagagtaattcatcccagaagttcaactctt |
10783965 |
T |
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| Q |
554 |
tcagtgtaggttcttcttctagagagagggaagataagga |
593 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |
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| T |
10783964 |
tgagtgtaggttcttcttctagagagagggaagataagga |
10783925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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