View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_20 (Length: 358)
Name: NF6975_low_20
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 6046338 - 6046669
Alignment:
| Q |
10 |
aagaatatcagacgcagtaatttgtcgctttagtagctcactaaaaagcttaatacggatattccttagtccagacttttgtacttcttcacttacattt |
109 |
Q |
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| T |
6046338 |
aagaatatccgatgcagtaatttgtcgcttaagcagctcactaagaagcttattacggatgtaccttggtccaaacttttctatttcttcacttacattt |
6046437 |
T |
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| Q |
110 |
tccataaagcaagcactgtcgtattgtgcaaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgccccaaattccaattc |
209 |
Q |
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| T |
6046438 |
tccataaagcaagcgctttcatattgtgcaaagtgctttgcaaacatctgtctggctatggttgtcttccctattccacccatgccccaaattccaattc |
6046537 |
T |
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| Q |
210 |
ttggatatcttttcagtagtgactcagtataactaccgtgttgatcattatgaacaaggcctttcagttcattgggatacatcaaggctagctttttcaa |
309 |
Q |
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| T |
6046538 |
ttgaatatcttttcagcagtgactcagtataactaccgtgttgatcgttatgaacaaggcctttcagttcattaggatacatcaaggctagctttttcca |
6046637 |
T |
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| Q |
310 |
aacatcactcacaatgcactg-atgacttgag |
340 |
Q |
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| T |
6046638 |
aacatcactgacaatgctctgaatgacttgag |
6046669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 239
Target Start/End: Original strand, 6062662 - 6062810
Alignment:
| Q |
91 |
tacttcttcacttacattttccataaagcaagcactgtcgtattgtgcaaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccaccc |
190 |
Q |
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| T |
6062662 |
tacttcttcacatgcattttccagaaagcaagcactttcatattgtgcaaagtgcttggcaaacatctgtctggctatggttgtctttcctattcctccc |
6062761 |
T |
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| Q |
191 |
atgccccaaattccaattcttggatatcttttcagtagtgactcagtat |
239 |
Q |
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| T |
6062762 |
atgccccaaattccaattctttgatactttttcagtagtgattcagtat |
6062810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 6087844 - 6087989
Alignment:
| Q |
95 |
tcttcacttacattttccataaagcaagcactgtcgtattgtgcaaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgc |
194 |
Q |
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| T |
6087844 |
tcttcacttacattttccaaaaagcaagcgctgtcatattctgcaaagtgcttggcaaacatttgtctggctatggttgtctttccgattcctcccatgc |
6087943 |
T |
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| Q |
195 |
cccaaattccaattcttggatatcttttcagtagtgactcagtata |
240 |
Q |
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| T |
6087944 |
cccatattccaattctttgatactttttcagtagtgattcagtata |
6087989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 6178934 - 6179131
Alignment:
| Q |
16 |
atcagacgcagtaatttgtcgctttagtagctcactaaaaagcttaatacggatattccttagtccagacttttgtacttcttcacttacattttccata |
115 |
Q |
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| T |
6178934 |
atcagacgctgtaatttctcgcttcagtagctcacgaagaagctgattacgaacatatattggtcccaacttttctgagtcttcgcttaccttttccaag |
6179033 |
T |
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| Q |
116 |
aagcaagcactgtcgtattgtgcaaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgccccaaattccaattcttgg |
213 |
Q |
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| T |
6179034 |
aagcatacattgtcataatgggcaaagttcttggcaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattcttgg |
6179131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 6187845 - 6187921
Alignment:
| Q |
137 |
gcaaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgccccaaattccaattcttgg |
213 |
Q |
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| T |
6187845 |
gcaaagttcttggaaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaattcttgg |
6187921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 6141000 - 6141074
Alignment:
| Q |
139 |
aaagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgccccaaattccaattcttgg |
213 |
Q |
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| T |
6141000 |
aaagttcttggcaaacatctgttttgctatggttgtctttcctattccactcatgccccaaattccaactcttgg |
6141074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 6123833 - 6123759
Alignment:
| Q |
140 |
aagtgcttggcaaacatctgtcgggctatagttgtcttccctattccacccatgccccaaattccaattcttgga |
214 |
Q |
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| T |
6123833 |
aagtgcttcgaaaacatttgtcttgctatggttgtttttcctaatccatccataccccaaattccaattcttgga |
6123759 |
T |
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