View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_low_25 (Length: 315)

Name: NF6975_low_25
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_low_25
NF6975_low_25
[»] chr5 (2 HSPs)
chr5 (14-163)||(5254446-5254589)
chr5 (222-305)||(5254644-5254727)
[»] chr7 (8 HSPs)
chr7 (35-163)||(4469734-4469858)
chr7 (222-304)||(4469598-4469680)
chr7 (222-304)||(39669603-39669685)
chr7 (35-163)||(38691057-38691179)
chr7 (35-98)||(39669443-39669506)
chr7 (227-272)||(38690952-38690997)
chr7 (222-266)||(4468349-4468393)
chr7 (40-91)||(4468526-4468577)
[»] chr1 (5 HSPs)
chr1 (35-188)||(20133868-20134016)
chr1 (222-304)||(24523691-24523773)
chr1 (35-98)||(24523869-24523932)
chr1 (227-305)||(20142132-20142209)
chr1 (222-273)||(20133787-20133838)
[»] chr8 (2 HSPs)
chr8 (35-188)||(6647846-6647995)
chr8 (222-304)||(6648025-6648107)
[»] chr6 (2 HSPs)
chr6 (40-163)||(11144219-11144338)
chr6 (222-273)||(11144106-11144157)
[»] chr2 (2 HSPs)
chr2 (35-163)||(13859575-13859699)
chr2 (222-304)||(13859754-13859836)
[»] scaffold0136 (2 HSPs)
scaffold0136 (222-300)||(40717-40795)
scaffold0136 (35-98)||(40888-40951)
[»] chr3 (2 HSPs)
chr3 (35-163)||(7551350-7551472)
chr3 (222-273)||(7551530-7551581)
[»] chr4 (1 HSPs)
chr4 (222-304)||(3993294-3993376)
[»] scaffold0416 (1 HSPs)
scaffold0416 (222-273)||(4368-4419)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 5254446 - 5254589
Alignment:
Q  14 acatcatgttaaaagatctaatatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagaca 113  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||     || |||||||    
T  5254446 acatcatgttaaaagatctaatatagagag--ttgagagattattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagaca 5254538  T
Q  114 aacgttagatggggtttt-tcttttctttggtggtacaaatttaaagagaa 163  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  5254539 aacgttagatgaggttttttcttttctttggtggcacaaatttaatgagaa 5254589  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 5254644 - 5254727
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccatc 305  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  5254644 atatggggatcgttgtttatattaccaaataaatagagaaaatagcactacaaaaaaaatagaaaacaaactatgatgtccatc 5254727  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 4469858 - 4469734
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-c 133  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     || |||||||||||||||||| ||||||| |    
T  4469858 tatatagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagtt-----accaaagacaaacgttagatgaggttttttc 4469764  T
Q  134 ttttctttggtggtacaaatttaaagagaa 163  Q
    ||||||||||||| |||||||||| |||||    
T  4469763 ttttctttggtggcacaaatttaatgagaa 4469734  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 4469680 - 4469598
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  4469680 atatggggttcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 4469598  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 39669603 - 39669685
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||| ||||||||||||||||    
T  39669603 atatggggatcggtgtttatattgccaaataaatagaaaaaatagcactaccaaaaaaatagaaaataaactatgatgtccat 39669685  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 38691179 - 38691057
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 134  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||      |||| ||||||||||||||||| | |||||| |    
T  38691179 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagtta-----attaccaaagacaaacgttagat-gagttttttt 38691086  T
Q  135 tttctttggtggtacaaatttaaagagaa 163  Q
    |||||||| ||| |||||||||| |||||    
T  38691085 tttctttgttggcacaaatttaatgagaa 38691057  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 39669443 - 39669506
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 98  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39669443 tatatagagatttgaaagatgattagtttgacataaagtggcacatatgtagacagagttagtt 39669506  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 38690997 - 38690952
Alignment:
Q  227 gggatcggtgtttatattgccaaataaatagagaaaatagcactac 272  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  38690997 gggatcggtggttatattgccaaataaatagagaaaataacactac 38690952  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 4468393 - 4468349
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatag 266  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  4468393 atatggggattgatgtttatattgccaaataaatagagaaaatag 4468349  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 4468577 - 4468526
Alignment:
Q  40 agagagttgagagatgattagtttggcataaagtggcacatatgtagacaga 91  Q
    ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  4468577 agagatttgagagaggattactttggcataaagtggcacaaatgtagacaga 4468526  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 20134016 - 20133868
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 134  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||     || |||||||||||||||||| ||||||| |    
T  20134016 tatatagagagttgagaaatgattagtttggcataaagtggcacagatgtagacagagttagtt-----accaaagacaaacgttagatgaggttttttt 20133922  T
Q  135 tttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 188  Q
    |||||||||||| |||||||||| |||||        |||||||||||||||||    
T  20133921 tttctttggtggcacaaatttaatgagaaatttttttagcaaaagtttgtttag 20133868  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 24523773 - 24523691
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  24523773 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgacgtccat 24523691  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 24523932 - 24523869
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 98  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  24523932 tatatagagagttaagagatgattagtttgacataaaatggcacatatgtagacagagttagtt 24523869  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 20142209 - 20142132
Alignment:
Q  227 gggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccatc 305  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||    
T  20142209 gggatccgtgtttatattgccaaataaataga-aaaatagcactaccaaaaaaatagaaaacaaactatgatgtccatc 20142132  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 20133838 - 20133787
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 273  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  20133838 atatggggatcggtgattatatttccaaataaatagagaaaatagcactacc 20133787  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 6647846 - 6647995
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tc 133  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||  ||||| ||    
T  6647846 tatatagagagttgaaagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgatgttttttc 6647940  T
Q  134 ttttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 188  Q
    ||||||||||||| |||||||||| |||||        |||||||||||||||||    
T  6647941 ttttctttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttag 6647995  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 6648025 - 6648107
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  6648025 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 6648107  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 11144338 - 11144219
Alignment:
Q  40 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-cttttc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||| | ||||| ||||||    
T  11144338 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgagattttttcttttc 11144244  T
Q  139 tttggtggtacaaatttaaagagaa 163  Q
    ||| |||||| |||||||| |||||    
T  11144243 tttagtggtataaatttaatgagaa 11144219  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 11144157 - 11144106
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11144157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 11144106  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 13859575 - 13859699
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatg-gggtttttc 133  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||  |||||||||||||| ||| || ||||||    
T  13859575 tatatagagagttgagagatgattagtttggcataaagtggcacatatatagacagagtta-----gttatcaaagacaaacgttatatgaggttttttc 13859669  T
Q  134 ttttctttggtggtacaaatttaaagagaa 163  Q
    ||||||||||||| |||||||||| |||||    
T  13859670 ttttctttggtggcacaaatttaatgagaa 13859699  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 13859754 - 13859836
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||    
T  13859754 atatggggatcagtgtttatattgccaaataaatatagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 13859836  T

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Target: scaffold0136 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 40795 - 40717
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgt 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  40795 atatgaggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgt 40717  T

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Target: scaffold0136; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 40951 - 40888
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 98  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  40951 tatatagagagttgagagatgattagtttgacataaagtggcacatatgtagacaaagttagtt 40888  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 7551350 - 7551472
Alignment:
Q  35 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 134  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||     || ||||||||||||||||||   ||||| |    
T  7551350 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagttagtt-----accaaagacaaacgttagatgatattttt-t 7551443  T
Q  135 tttctttggtggtacaaatttaaagagaa 163  Q
    |||||||| ||| |||||||||| |||||    
T  7551444 tttctttgttggcacaaatttaatgagaa 7551472  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 7551530 - 7551581
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7551530 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 7551581  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 3993376 - 3993294
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 304  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||        ||||||||||||||||||||||||    
T  3993376 atatggggatcggtgtttatattgctaaataaatagagaaaatagcgctacgaaaaaaatagaaaacaaactatgatgtccat 3993294  T

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Target: scaffold0416 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 4419 - 4368
Alignment:
Q  222 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4419 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 4368  T

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