View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_28 (Length: 301)
Name: NF6975_low_28
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 33807838 - 33808119
Alignment:
| Q |
6 |
agatggacatcacaaatgcaatgtctaaaatataggacacgaggacaagatgcacacacacaaagatacaaaagggttataaaacatatcattcaaggtt |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33807838 |
agatggacacaacaaatgcaatgtctaaaatataggacacggggacaagatgcacacacacaaagatacaaaagggttataaagcatatcattcaaggtt |
33807937 |
T |
|
| Q |
106 |
taacaaaacagctttgaaatagtgtgatgcttacccaatctacccttatcatgaatttgagaacttgtagctaacagcctcttgccttggttgatttttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
33807938 |
taacaaaacagctttgaaatagtgtgatgcttacccaagctacccttatcatgaatttgaggacttgtagctaacagcctcttgccttgattgatttttc |
33808037 |
T |
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| Q |
206 |
tgcaaaacacgtcaaaacggaaatcaaccaaattgttactttaagagacacgtatatttatgcactcaatgcccactgatgt |
287 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33808038 |
tgcaaaacacgtcaaaacagatatcaaccaaattgttactttaagagacacgtatatttatgcactcaatgcccactgatgt |
33808119 |
T |
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