View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_low_29 (Length: 300)

Name: NF6975_low_29
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_low_29
NF6975_low_29
[»] scaffold0003 (2 HSPs)
scaffold0003 (6-182)||(55764-55940)
scaffold0003 (249-290)||(56007-56048)
[»] chr6 (4 HSPs)
chr6 (6-182)||(27431423-27431599)
chr6 (6-179)||(12515620-12515793)
chr6 (249-290)||(27431315-27431356)
chr6 (258-290)||(12515512-12515544)
[»] chr4 (4 HSPs)
chr4 (6-182)||(18069959-18070135)
chr4 (6-182)||(42615040-42615216)
chr4 (249-290)||(18070202-18070243)
chr4 (249-290)||(42614932-42614973)
[»] scaffold0061 (2 HSPs)
scaffold0061 (6-182)||(35459-35635)
scaffold0061 (249-290)||(35349-35392)
[»] scaffold0017 (2 HSPs)
scaffold0017 (6-182)||(163144-163320)
scaffold0017 (249-290)||(163387-163430)
[»] chr3 (5 HSPs)
chr3 (6-182)||(38348967-38349143)
chr3 (6-182)||(20787485-20787661)
chr3 (249-290)||(10028233-10028274)
chr3 (249-290)||(20787728-20787769)
chr3 (249-290)||(38348859-38348900)
[»] chr1 (2 HSPs)
chr1 (6-182)||(40700746-40700919)
chr1 (249-290)||(40700638-40700679)
[»] chr5 (1 HSPs)
chr5 (6-182)||(1158356-1158534)
[»] chr8 (2 HSPs)
chr8 (42-178)||(12164412-12164549)
chr8 (42-178)||(12408840-12408977)


Alignment Details
Target: scaffold0003 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 55764 - 55940
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55764 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 55863  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55864 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 55940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 56007 - 56048
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  56007 ttcaatagaatatgaaaccgaacataacatatattatagatg 56048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 27431599 - 27431423
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27431599 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 27431500  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27431499 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 27431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 12515793 - 12515620
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12515793 gaaatgaattgattatatacaaaatgaatacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 12515694  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaag 179  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  12515693 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatctttcatgaaataagtacaaatgggaag 12515620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 27431356 - 27431315
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  27431356 ttcaatagaatatgaaaccgaacataacatatattatagatg 27431315  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 12515544 - 12515512
Alignment:
Q  258 atataaaaccgaacataacatatattatagatg 290  Q
    |||| ||||||||||||||||||||||||||||    
T  12515544 atatgaaaccgaacataacatatattatagatg 12515512  T

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Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 18069959 - 18070135
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18069959 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 18070058  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18070059 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 18070135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 42615216 - 42615040
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42615216 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatacgaaaataattgatctt 42615117  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42615116 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacagatgggaagcag 42615040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 18070202 - 18070243
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  18070202 ttcaatagaatatgaaaccgaacataacatatattatagatg 18070243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 42614973 - 42614932
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  42614973 ttcaatagaatatgaaaccgaacataacatatattttagatg 42614932  T

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Target: scaffold0061 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 35635 - 35459
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35635 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatcat 35536  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35535 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatctttcatggaataagtacaaatgggaagcag 35459  T

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Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 35392 - 35349
Alignment:
Q  249 ttcaatagaatataaaaccgaac--ataacatatattatagatg 290  Q
    ||||||||||||| |||||||||  |||||||||||||||||||    
T  35392 ttcaatagaatatgaaaccgaacatataacatatattatagatg 35349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 163144 - 163320
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  163144 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatcat 163243  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  163244 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatctttcatggaataagtacaaatgggaagcag 163320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 163387 - 163430
Alignment:
Q  249 ttcaatagaatataaaaccgaac--ataacatatattatagatg 290  Q
    ||||||||||||| |||||||||  |||||||||||||||||||    
T  163387 ttcaatagaatatgaaaccgaacatataacatatattatagatg 163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 38349143 - 38348967
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38349143 gaaatgaattgattatatacaaaatgattacaaacgtatatacacgtcaaaacatgaataaattaaacaaaagatcatagatatgaaaataattgatctt 38349044  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38349043 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 38348967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 20787485 - 20787661
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20787485 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatatgaaaataattgatctt 20787584  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20787585 agtgttacaatggcaaccaaaaggaaatgacacaataaatcaaaatcttttatgaaataagtacaaatgggaagcag 20787661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 10028233 - 10028274
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  10028233 ttcaatagaatatgaaaccgaacataacatatattatagatg 10028274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 20787728 - 20787769
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  20787728 ttcaatagaatatgaaaccgaacataacatatattatagatg 20787769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 38348900 - 38348859
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  38348900 ttcaatagaatatgaaaccgaacataacatatattatagatg 38348859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 40700919 - 40700746
Alignment:
Q  6 gaaatgaattgatcatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatctt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  ||||||||||| |||    
T  40700919 gaaatgaattgattatatacaaaatgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaa---catagatacgaaaataattgacctt 40700823  T
Q  106 agtgttacaatggcaaccaaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  40700822 agtgttacaatggcaaccaaaaggaaataacacaataaatcaaaatcttttatggaataagtacagataggaagcag 40700746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 40700679 - 40700638
Alignment:
Q  249 ttcaatagaatataaaaccgaacataacatatattatagatg 290  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  40700679 ttcaatagaatatgaaaccgaacataacatatattatagatg 40700638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 1158534 - 1158356
Alignment:
Q  6 gaaatgaattgatcatatacaaaa-tgattacaaacgtatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatct 104  Q
    |||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  1158534 gaaatgaattaattatatacaaaaatgattacaaacatatatacacatcaaaacatgaataaattaatcaaaagatcatagatataaaaataattaatct 1158435  T
Q  105 tagtgttacaatggcaac-caaaagaaaataacacaataaatcaaaatcttttatggaataagtacaaatgggaagcag 182  Q
    ||||||||||||||||||  |||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  1158434 tagtgttacaatggcaacaaaaaaaaaaataacacaattaatcaaaatctttcatggaataattacaaatgggaagcag 1158356  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 12164412 - 12164549
Alignment:
Q  42 tatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatcttagtgttacaatggcaaccaaaagaaaat-aacacaa 140  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||||||||||||||||| |||||| |||| ||    
T  12164412 tatatacacatcaaaatatgaataaattaaacaatagatcatggatagaaaaatgtttgatcttagtgttacaatggcaaccaaacgaaaataaacaaaa 12164511  T
Q  141 taaatcaaaatcttttatggaataagtacaaatgggaa 178  Q
     |||||||||||  | ||| ||||||||||||| ||||    
T  12164512 aaaatcaaaatccatcatgaaataagtacaaataggaa 12164549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 12408840 - 12408977
Alignment:
Q  42 tatatacacatcaaaacatgaataaattaaacaaaagatcatagatataaaaataattgatcttagtgttacaatggcaaccaaaagaaaat-aacacaa 140  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||  ||||||||||||||||||||||||||||| |||||| |||| ||    
T  12408840 tatatacacatcaaaatatgaataaattaaacaatagatcatggatagaaaaatgtttgatcttagtgttacaatggcaaccaaacgaaaataaacaaaa 12408939  T
Q  141 taaatcaaaatcttttatggaataagtacaaatgggaa 178  Q
     |||||||||||  | ||| ||||||||||||| ||||    
T  12408940 aaaatcaaaatccatcatgaaataagtacaaataggaa 12408977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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