View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6975_low_31 (Length: 287)

Name: NF6975_low_31
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6975_low_31
NF6975_low_31
[»] chr3 (15 HSPs)
chr3 (68-163)||(50743542-50743638)
chr3 (65-163)||(52009232-52009331)
chr3 (69-143)||(502408-502482)
chr3 (63-143)||(41457512-41457592)
chr3 (94-143)||(23151574-23151623)
chr3 (78-143)||(33584047-33584112)
chr3 (78-143)||(51166529-51166594)
chr3 (95-143)||(38253266-38253314)
chr3 (78-140)||(1545342-1545404)
chr3 (78-143)||(37125919-37125985)
chr3 (78-143)||(2446650-2446715)
chr3 (94-143)||(8067878-8067927)
chr3 (78-143)||(10660307-10660372)
chr3 (78-143)||(51755099-51755164)
chr3 (95-143)||(8827692-8827740)
[»] chr6 (5 HSPs)
chr6 (65-163)||(2560333-2560431)
chr6 (78-143)||(18676042-18676107)
chr6 (78-143)||(34476358-34476423)
chr6 (165-201)||(2560153-2560189)
chr6 (94-143)||(8063574-8063623)
[»] chr8 (8 HSPs)
chr8 (71-151)||(27225600-27225681)
chr8 (63-135)||(11352241-11352313)
chr8 (94-143)||(32834896-32834945)
chr8 (78-143)||(35392844-35392909)
chr8 (65-132)||(18575688-18575755)
chr8 (62-109)||(41873580-41873627)
chr8 (78-143)||(29998390-29998455)
chr8 (78-143)||(30699334-30699399)
[»] chr7 (8 HSPs)
chr7 (67-162)||(39494981-39495077)
chr7 (78-141)||(31587129-31587192)
chr7 (94-143)||(12849068-12849117)
chr7 (94-143)||(25105897-25105946)
chr7 (94-143)||(31622666-31622715)
chr7 (94-143)||(38742507-38742556)
chr7 (95-143)||(5543603-5543651)
chr7 (95-143)||(41118020-41118068)
[»] chr5 (7 HSPs)
chr5 (62-135)||(8935145-8935218)
chr5 (78-143)||(8336141-8336206)
chr5 (63-143)||(11255341-11255420)
chr5 (94-143)||(6230992-6231041)
chr5 (62-143)||(33569302-33569383)
chr5 (165-201)||(8935564-8935600)
chr5 (95-143)||(10691346-10691394)
[»] chr2 (9 HSPs)
chr2 (19-64)||(42756532-42756577)
chr2 (68-122)||(18377234-18377288)
chr2 (94-143)||(14286638-14286687)
chr2 (78-143)||(26479097-26479162)
chr2 (94-143)||(31546620-31546669)
chr2 (219-275)||(18376481-18376537)
chr2 (94-143)||(2358085-2358134)
chr2 (94-143)||(39429256-39429305)
chr2 (69-133)||(9728800-9728864)
[»] chr4 (12 HSPs)
chr4 (65-143)||(44878993-44879071)
chr4 (64-129)||(31445440-31445505)
chr4 (78-143)||(45885720-45885785)
chr4 (65-131)||(23114498-23114564)
chr4 (94-143)||(36224470-36224519)
chr4 (67-143)||(11309990-11310066)
chr4 (78-143)||(7553490-7553555)
chr4 (94-143)||(29924278-29924327)
chr4 (78-143)||(33115427-33115492)
chr4 (98-143)||(36431756-36431801)
chr4 (78-143)||(39677085-39677150)
chr4 (95-143)||(50622399-50622447)
[»] chr1 (12 HSPs)
chr1 (67-143)||(17924993-17925069)
chr1 (94-143)||(3047550-3047599)
chr1 (78-143)||(3994409-3994474)
chr1 (78-143)||(44053960-44054025)
chr1 (78-143)||(49457535-49457600)
chr1 (82-163)||(8970441-8970521)
chr1 (94-143)||(42885603-42885653)
chr1 (98-143)||(6979421-6979466)
chr1 (94-143)||(37093235-37093284)
chr1 (78-143)||(49740617-49740682)
chr1 (78-143)||(50501430-50501495)
chr1 (63-143)||(18605952-18606032)
[»] scaffold0548 (1 HSPs)
scaffold0548 (67-143)||(8336-8412)
[»] scaffold0057 (1 HSPs)
scaffold0057 (78-143)||(42030-42095)
[»] scaffold0041 (1 HSPs)
scaffold0041 (95-143)||(104906-104954)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 50743542 - 50743638
Alignment:
Q  68 agatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa-ttcaattcaattcaaaacccac 163  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  50743542 agatactacccacatctcaaataatctaagttacatcccaaaattactaatacaccctttaattaaaataaaaatttcaattcaattcaaaacccac 50743638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 52009232 - 52009331
Alignment:
Q  65 gacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa-ttcaattcaattcaaaacccac 163  Q
    |||| ||||||  ||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  52009232 gacatatactattcactccccaaataatccaagttacacaccaaaattactaatataccctttaattaaaataaaaacttcaatttaattcaaaacccac 52009331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 502482 - 502408
Alignment:
Q  69 gatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||||||||||||||||||||| || || |||||||| |||| || ||||||||||||||||||||    
T  502482 gatactactcacaccccaaataatccaagtttcaccctaaaattaccaataaaccctttaattaaaataaaaatt 502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 41457592 - 41457512
Alignment:
Q  63 aagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||| ||||||| ||||||||||| ||  ||||||||| |||| ||| |||||||||  |||||| |||||||||||||    
T  41457592 aagacacatactactcacaccccaaaaaacacaagttacaccccataatgactaatatatcctttaactaaaataaaaatt 41457512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 23151623 - 23151574
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| ||||||||||||||||||||    
T  23151623 caagttacaccccagaatgactaatataccctttaattaaaataaaaatt 23151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 33584112 - 33584047
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  33584112 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 33584047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 51166529 - 51166594
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  51166529 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 51166594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 38253314 - 38253266
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||||||| |||||||||| |||||| |||||||||||||    
T  38253314 aagttacaccccaaaatgactaatataccctttaaataaaataaaaatt 38253266  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 1545342 - 1545404
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaa 140  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| ||||||||||    
T  1545342 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaa 1545404  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 37125919 - 37125985
Alignment:
Q  78 cacaccccaaataatc-caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||||||   |||||||||  ||||||| |||||||||| |||||| |||||||||||||    
T  37125919 cacaccccaaataaaaacaagttacactccaaaatgactaatataccctttaactaaaataaaaatt 37125985  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 2446715 - 2446650
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  |||||||||  ||| ||| |||||||||| |||||| |||||||||||||    
T  2446715 cacaccccaaaaaaaacaagttacactccagaatgactaatataccctttaactaaaataaaaatt 2446650  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 8067878 - 8067927
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  8067878 caagttacaccccagaatgactaatataccctttaactaaaataaaaatt 8067927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 10660372 - 10660307
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| || | ||| |||||||||| |||||| |||||||||||||    
T  10660372 cacaccccaaaaaaaacaagttacaccctagaatgactaatataccctttaactaaaataaaaatt 10660307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 51755164 - 51755099
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| | |||||||| |||||| |||||||||||||    
T  51755164 cacaccccaaaaaaaacaagttacaccccagaatgattaatataccctttaactaaaataaaaatt 51755099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 8827692 - 8827740
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||  ||| ||| |||||||||| ||||||||||||||||||||    
T  8827692 aagttacactccagaatgactaatataccctttaattaaaataaaaatt 8827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 2560431 - 2560333
Alignment:
Q  65 gacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa-ttcaattcaattcaaaacccac 163  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||| ||||| |||||||||    
T  2560431 gacagatactacc-acaccctaaataatccaagttacaccccaaaaatactaatataccctttaattaaaataaaaatttcaatccaatttaaaacccac 2560333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 18676042 - 18676107
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  18676042 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 18676107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 34476423 - 34476358
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| ||||| |||| ||||||||||||||||||||    
T  34476423 cacaccccaaaaaaaacaagttacaccccataatgactaaaataccctttaattaaaataaaaatt 34476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 2560189 - 2560153
Alignment:
Q  165 gttcatgtaaactgagtttacgtgtacgttattcctt 201  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2560189 gttcatgtaaactgagtttacgtgtatgttattcctt 2560153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 8063623 - 8063574
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||||| ||| | |||||||| |||||| |||||||||||||    
T  8063623 caagttacatcccagaatgattaatataccctttaactaaaataaaaatt 8063574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 27225681 - 27225600
Alignment:
Q  71 tactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa-ttcaattcaa 151  Q
    |||||||||||||| ||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||| ||||||||||    
T  27225681 tactacccacacccgaaataatccaagttatatcccaaaattattaatataccttttaattaaaataaaaatttcaattcaa 27225600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 11352313 - 11352241
Alignment:
Q  63 aagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaa 135  Q
    ||||||||||||| |||||| | ||||||| ||||||||| |||||| ||||||||||||| |||||||||||    
T  11352313 aagacagatactatccacactcgaaataattcaagttacaccccaaacttactaatatactttttaattaaaa 11352241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 32834945 - 32834896
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  32834945 caagttacatcccagaatgactaatataccctttaactaaaataaaaatt 32834896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 35392844 - 35392909
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  35392844 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 35392909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 18575755 - 18575688
Alignment:
Q  65 gacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaatta 132  Q
    |||||||||||| ||||||||||| |||||||||||||  ||| ||| ||| |||||  |||||||||    
T  18575755 gacagatactactcacaccccaaaaaatccaagttacacaccagaatgactgatatatcctttaatta 18575688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 41873627 - 41873580
Alignment:
Q  62 taagacagatactacccacaccccaaataatccaagttacatcccaaa 109  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  41873627 taagacaaatactactcacactccaaataatccaagttacaccccaaa 41873580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 29998455 - 29998390
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| | || ||| |||||||||| |||||| |||||||||||||    
T  29998455 cacaccccaaaaaaaacaagttacacctcagaatgactaatataccctttaactaaaataaaaatt 29998390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 30699334 - 30699399
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| | || ||| |||||||||| |||||| |||||||||||||    
T  30699334 cacaccccaaaaaaaacaagttacacctcagaatgactaatataccctttaactaaaataaaaatt 30699399  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 39495077 - 39494981
Alignment:
Q  67 cagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa-ttcaattcaattcaaaaccca 162  Q
    ||||||||||||||||| ||||||||| ||||||||  ||||||||| ||||||||  ||||||||||||||||| |||||| ||||| ||||||||    
T  39495077 cagatactacccacacctcaaataatctaagttacactccaaaattattaatataccatttaattaaaataaaaatttcaatccaatttaaaaccca 39494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 31587129 - 31587192
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaa 141  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| ||||||||||||||||||    
T  31587129 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaattaaaataaaaa 31587192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 12849117 - 12849068
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| || | ||| |||||||||| ||||||||||||||||||||    
T  12849117 caagttacaccctagaatgactaatataccctttaattaaaataaaaatt 12849068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 25105946 - 25105897
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||| |||| |||||||| |||||||||| |||||| |||||||||||||    
T  25105946 caagctacaccccaaaatgactaatataccctttaactaaaataaaaatt 25105897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 31622715 - 31622666
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  31622715 caagttacaccccagaatgactaatataccctttaactaaaataaaaatt 31622666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 38742507 - 38742556
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  38742507 caagttacaccccagaatgactaatataccctttaactaaaataaaaatt 38742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 5543603 - 5543651
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  5543603 aagttacaccccagaatgactaatataccctttaactaaaataaaaatt 5543651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 41118020 - 41118068
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  41118020 aagttacaccccagaatgactaatataccctttaactaaaataaaaatt 41118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 8935145 - 8935218
Alignment:
Q  62 taagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaa 135  Q
    |||||||||||||| ||||| || ||||||||||| ||||| |||||| |||||||||||| ||||||||||||    
T  8935145 taagacagatactatccacatccaaaataatccaaattacaccccaaacttactaatataccctttaattaaaa 8935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 8336206 - 8336141
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||| |||||||||| ||| |||||||||| |||||| |||||||||||||    
T  8336206 cacaccccaaaaaaaacaaattacatcccataatgactaatataccctttaactaaaataaaaatt 8336141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 11255420 - 11255341
Alignment:
Q  63 aagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||| | ||||||||||| ||  |||||||||| ||| ||| ||||||||||  ||||| |||||||||||||    
T  11255420 aagacagatact-ctcacaccccaaaaaacacaagttacattccagaatgactaatataccttttaactaaaataaaaatt 11255341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 6231041 - 6230992
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  6231041 caagttacaccccagaatgactaatataccctttaactaaaataaaaatt 6230992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 33569302 - 33569383
Alignment:
Q  62 taagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||| ||||| |||| ||||||||||| ||   ||| |||| |||||| | |||||||||| |||||| |||||||||||||    
T  33569302 taaggcagatgctactcacaccccaaaaaacataagatacaccccaaactgactaatataccctttaactaaaataaaaatt 33569383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 8935564 - 8935600
Alignment:
Q  165 gttcatgtaaactgagtttacgtgtacgttattcctt 201  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  8935564 gttcatgtaaagtgagtttacgtgtatgttattcctt 8935600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 10691346 - 10691394
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||| || ||| |||||||||| |||||| |||||||||||||    
T  10691346 aagttacatctcagaatgactaatataccctttaactaaaataaaaatt 10691394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 42756532 - 42756577
Alignment:
Q  19 gaaattggtgtataacacacgtaatttgtaccaaagataaagataa 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42756532 gaaattggtgtataacacacgtaatttgtaccaaagataaagataa 42756577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 18377288 - 18377234
Alignment:
Q  68 agatactacccacaccccaaataatccaagttacatcccaaaattactaatatac 122  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  18377288 agatactactcacaccccaaataatccaagttgcaccccaaaattactaatatac 18377234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 14286638 - 14286687
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| ||||||||||||||||||||    
T  14286638 caagttacaccccagaatgactaatataccctttaattaaaataaaaatt 14286687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 26479097 - 26479162
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  26479097 cacaccccaaaaaaaacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 26479162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 31546620 - 31546669
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  31546620 caagttacatcccagaatgactaatataccctttaactaaaataaaaatt 31546669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 18376537 - 18376481
Alignment:
Q  219 gtcaatcactcgcgtgtcttctccattaggtactgtaagtttttagttcttcatctc 275  Q
    ||||||| ||||||||||||||||||||||   |||||||||| | |||||||||||    
T  18376537 gtcaatcgctcgcgtgtcttctccattagggtttgtaagttttcaattcttcatctc 18376481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 2358134 - 2358085
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  2358134 caagttacaccccagaatgactaatataccctttaactaaaataaaaatt 2358085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 39429256 - 39429305
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||  ||| ||| |||||||||| ||||||||||||||||||||    
T  39429256 caagttacactccagaatgactaatataccctttaattaaaataaaaatt 39429305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 9728800 - 9728864
Alignment:
Q  69 gatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaa 133  Q
    |||||||| ||||||||||||||||||| ||||| ||  ||||||| | ||||  ||||||||||    
T  9728800 gatactactcacaccccaaataatccaaattacacccttaaattaccactatatcctttaattaa 9728864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 44879071 - 44878993
Alignment:
Q  65 gacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||| ||||||||||| ||  |||||||||| ||| ||| |||||||||| |||||| |||||||||||||    
T  44879071 gacagatactactcacaccccaaaaaacacaagttacattccataatgactaatataccctttaactaaaataaaaatt 44878993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 31445505 - 31445440
Alignment:
Q  64 agacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaa 129  Q
    ||||||||||||| |||||||| || ||||||| ||||| |||||||| |||||||||| ||||||    
T  31445505 agacagatactactcacaccccgaaaaatccaaattacaccccaaaatgactaatataccctttaa 31445440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 45885785 - 45885720
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||||| || ||| ||||||||||||||||| |||||||||||||    
T  45885785 cacaccccaaaaaaaacaagttacatctcagaatgactaatatactctttaactaaaataaaaatt 45885720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 23114498 - 23114564
Alignment:
Q  65 gacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaatt 131  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||||||||  ||||||  ||||||||    
T  23114498 gacagatactactcacaccccaaaaaattcaagttacaccccaaaattatcaatatatcctttaatt 23114564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 36224470 - 36224519
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  36224470 caagttacatcccagaatgactaatataccctttaactaaaataaaaatt 36224519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 11310066 - 11309990
Alignment:
Q  67 cagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||| |||| ||||||||||| ||  ||||||||| |||| | | |||||||||| |||||| |||||||||||||    
T  11310066 cagatgctactcacaccccaaaaaacacaagttacaccccagactgactaatataccctttaactaaaataaaaatt 11309990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 7553490 - 7553555
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| | || ||| |||||||||| |||||| |||||||||||||    
T  7553490 cacaccccaaaaaaaacaagttacacctcagaatgactaatataccctttaactaaaataaaaatt 7553555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 29924327 - 29924278
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| ||| | |||||||| ||||||||||||||||||||    
T  29924327 caagttacaccccagaatgattaatataccctttaattaaaataaaaatt 29924278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 33115427 - 33115492
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| ||| |||||||||| |||||| |||||||| ||||    
T  33115427 cacaccccaaaaaaaacaagttacaccccagaatgactaatatacactttaactaaaataagaatt 33115492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 36431756 - 36431801
Alignment:
Q  98 ttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| | ||| ||||||||||||||||| |||||||||||||    
T  36431756 ttacatcctagaatgactaatatactctttaactaaaataaaaatt 36431801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 39677085 - 39677150
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||||  || ||| |||||||||| |||||| |||||||||||||    
T  39677085 cacaccccaaaaaaaacaagttacatttcagaatgactaatataccctttaactaaaataaaaatt 39677150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 50622447 - 50622399
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  50622447 aagttacaccccagaatgactaatataccctttaactaaaataaaaatt 50622399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 17924993 - 17925069
Alignment:
Q  67 cagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||| |||| ||||||||||| ||| ||||||||| |||| | | |||||||||| |||||| |||||||||||||    
T  17924993 cagatgctactcacaccccaaaaaatacaagttacaccccagattgactaatataccctttaactaaaataaaaatt 17925069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 3047599 - 3047550
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||||||||    
T  3047599 caagttacatcccagaatgactaatataccctttaactaaaataaaaatt 3047550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 3994409 - 3994474
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  |||||| || |||| ||| |||||||||| ||||||||||||||||||||    
T  3994409 cacaccccaaaaaaaacaagttgcaccccagaatgactaatataccctttaattaaaataaaaatt 3994474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 44053960 - 44054025
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||   |||||||| || ||||| |||||||||| ||||||||||||||||||||    
T  44053960 cacaccccaaaaaaaataagttacaccctaaaatgactaatataccctttaattaaaataaaaatt 44054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 49457600 - 49457535
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  |||||| ||||||| ||| |||||||||| |||||| |||||||||||||    
T  49457600 cacaccccaaaaaaaacaagttgcatcccagaatgactaatataccctttaactaaaataaaaatt 49457535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 8970521 - 8970441
Alignment:
Q  82 ccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaata-aaaattcaattcaattcaaaacccac 163  Q
    ||||| ||||||||||||||||| |||||||||| |||||| | |||||||||||| ||  ||| || |||||||||||||||    
T  8970521 ccccatataatccaagttacatcacaaaattact-atatac-ccttaattaaaatacaattttcgatccaattcaaaacccac 8970441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 42885653 - 42885603
Alignment:
Q  94 caagttacatcccaaaatt-actaatatactctttaattaaaataaaaatt 143  Q
    ||||||||| |||| |||| ||||||||||||||||| |||||||||||||    
T  42885653 caagttacaccccagaattgactaatatactctttaactaaaataaaaatt 42885603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 6979466 - 6979421
Alignment:
Q  98 ttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||| |||||||| |||||||||| |||||| |||||||||||||    
T  6979466 ttacaccccaaaatgactaatataccctttaactaaaataaaaatt 6979421  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 37093235 - 37093284
Alignment:
Q  94 caagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||||||| | ||| |||||||||| |||||| |||||||||||||    
T  37093235 caagttacatcctagaatgactaatataccctttaactaaaataaaaatt 37093284  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 49740682 - 49740617
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| ||  ||||||||| |||| | | |||||||||| |||||| |||||||||||||    
T  49740682 cacaccccaaaaaacacaagttacaccccagactgactaatataccctttaactaaaataaaaatt 49740617  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 50501495 - 50501430
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| |   ||||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  50501495 cacaccccaaaaataacaagttacaccccagaatgactaatataccctttaactaaaataaaaatt 50501430  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 18606032 - 18605952
Alignment:
Q  63 aagacagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||| ||||||| |||||| |||| ||  |||||| || |||| ||| |||||||||| ||| || |||||||||||||    
T  18606032 aagacacatactactcacaccgcaaaaaacacaagttgcaccccataatgactaatatacccttgaactaaaataaaaatt 18605952  T

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Target: scaffold0548 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 8336 - 8412
Alignment:
Q  67 cagatactacccacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||| |||| ||||||||||| ||  ||||||||| |||| | | |||||||||| |||||| |||||||||||||    
T  8336 cagatgctactcacaccccaaaaaacacaagttacaccccagactgactaatataccctttaactaaaataaaaatt 8412  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 42030 - 42095
Alignment:
Q  78 cacaccccaaataatccaagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    ||||||||||| |||  |||||||| || | ||| |||||||||| |||||| |||||||||||||    
T  42030 cacaccccaaaaaatataagttacacccaagaatgactaatataccctttaactaaaataaaaatt 42095  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 104906 - 104954
Alignment:
Q  95 aagttacatcccaaaattactaatatactctttaattaaaataaaaatt 143  Q
    |||||||| |||| ||| |||||||||| |||||| |||||||||||||    
T  104906 aagttacaccccagaatgactaatataccctttaactaaaataaaaatt 104954  T

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