View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_32 (Length: 286)
Name: NF6975_low_32
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_32 |
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| [»] chr1 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 286
Target Start/End: Original strand, 37154176 - 37154413
Alignment:
| Q |
49 |
agcagaacatcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtca |
148 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154176 |
agcataacatcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtca |
37154275 |
T |
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| Q |
149 |
ccaccatggaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacaagctttgatttgtctgaaccag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
37154276 |
ccaccatggaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacacgctttgatttgtttgaaccag |
37154375 |
T |
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| Q |
249 |
ggccatagttatggtattcaacatagtagcaagtgtcc |
286 |
Q |
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| T |
37154376 |
ggccatagttatggtattcagcatagaagcaagtgtcc |
37154413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 286
Target Start/End: Complemental strand, 37151193 - 37150964
Alignment:
| Q |
57 |
atcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtcaccaccatg |
156 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37151193 |
atcaagatcaccatttaggcactgtcttttcgtgcttcttgtgttccggtatatttggatagtaaggaattccagtgtccttaatccagtcaccaccatg |
37151094 |
T |
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| Q |
157 |
gaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacaagctttgatttgtctgaaccagggccatag |
256 |
Q |
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| T |
37151093 |
gaagaacttggatggtgcaaacttttgtgcagcctttgtattgatgttatagattccagcccatttcacacgctttgatttgtctgaaccagggccatag |
37150994 |
T |
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| Q |
257 |
ttatggtattcaacatagtagcaagtgtcc |
286 |
Q |
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| T |
37150993 |
ttatggtattcagcatagtagcaagtgtcc |
37150964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 286
Target Start/End: Complemental strand, 37160018 - 37159789
Alignment:
| Q |
57 |
atcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtcaccaccatg |
156 |
Q |
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| T |
37160018 |
atcaagatcaccatttaggcactgtcttttcgtgcttcttgtgttccggtatatttggatagtaaggaattccagtgtccttaatccagtcaccaccatg |
37159919 |
T |
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| Q |
157 |
gaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacaagctttgatttgtctgaaccagggccatag |
256 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37159918 |
gaagaacttggatggtgcaaacttttgtgcagcctttgtattgatgttatagattccagcccatttcacacgctttgatttgtctgaaccagggccatag |
37159819 |
T |
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| Q |
257 |
ttatggtattcaacatagtagcaagtgtcc |
286 |
Q |
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| T |
37159818 |
ttatggtattcagcatagtagcaagtgtcc |
37159789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37153822 - 37153873
Alignment:
| Q |
1 |
caataaaatcaaccaagtgattaattataagcactttttataagcacaagca |
52 |
Q |
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| T |
37153822 |
caataaaatcaaccaagtaattaattataagcactttttataagcataagca |
37153873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 57 - 286
Target Start/End: Original strand, 91276 - 91505
Alignment:
| Q |
57 |
atcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtcaccaccatg |
156 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
91276 |
atcaagatcaccatttaggcactgtcttttcgtgcttcttgtgttccggtatatttggatagtaaggaattccagtgtccttaatccagtcaccaccatg |
91375 |
T |
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| Q |
157 |
gaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacaagctttgatttgtctgaaccagggccatag |
256 |
Q |
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| T |
91376 |
gaagaacttggatggtgcaaacttttgtgcagcctttgtattgatgttatagattccagcccatttcacacgctttgatttgtctgaaccagggccatag |
91475 |
T |
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| Q |
257 |
ttatggtattcaacatagtagcaagtgtcc |
286 |
Q |
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| T |
91476 |
ttatggtattcaacatagtagcaagtgtcc |
91505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 57 - 286
Target Start/End: Original strand, 94583 - 94812
Alignment:
| Q |
57 |
atcaagatcaccatttaagcactgtctttttgtgcttcttgtgttcaggtatagttggaaagtaaggaattccagtgtccttaatccagtcaccaccatg |
156 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
94583 |
atcaagatcaccatttaggcactgtcttttcgtgcttcttgtgttccggtatatttggatagtaaggaattccagtgtccttaatccagtcaccaccatg |
94682 |
T |
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| Q |
157 |
gaagaacttggatggtgcaaacctatgtgcagcctttgaattgatgttatagattccagcccatttcacaagctttgatttgtctgaaccagggccatag |
256 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
94683 |
gaagaacttggatggtgcaaacttttgtgcagcctttgtattgatgttatagattccagcccatttcacacgctttgatttgtctgaaccagggccatag |
94782 |
T |
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| Q |
257 |
ttatggtattcaacatagtagcaagtgtcc |
286 |
Q |
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| T |
94783 |
ttatggtattcaacatagtagcaagtgtcc |
94812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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