View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_35 (Length: 263)
Name: NF6975_low_35
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 35881070 - 35880832
Alignment:
| Q |
14 |
ggacatcaataggtactacattcatcacccagattggtctatcaatgagagatgcggcaaatctgaaaaataagacaatcggtatcaatttgactgaagt |
113 |
Q |
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| T |
35881070 |
ggacatcaataggtactacattcatcacccagattggtctatcaataagagatgcggcaaatctgaaaaataagacaatcggtatcaatttgactgaagt |
35880971 |
T |
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| Q |
114 |
ttggtggaaactagccaacttcagttgacacaagtgttagataagattggcatcaacaaatccacacaaagttcaacnnnnnnnnctaatcttttacaaa |
213 |
Q |
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| T |
35880970 |
ttggtggaaactagccaacttcagttgacacaagtgttagataagattgacatcaataaatccacacaaagttcaacaaaaaaaactaatcttttacaaa |
35880871 |
T |
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| Q |
214 |
gtatatactttaccctgcataaccagcattgatgtccat |
252 |
Q |
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| T |
35880870 |
gtatatactttaccctgcataaccagcattcatgtccat |
35880832 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 32096386 - 32096451
Alignment:
| Q |
18 |
atcaataggtactacattcatcacccagattggtctatcaatgagagatgcggcaaatctgaaaaa |
83 |
Q |
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| T |
32096386 |
atcaattggtactacattcatcacccacaatggtcgatcgataagagctgcagcaaatctgaaaaa |
32096451 |
T |
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