View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_38 (Length: 255)
Name: NF6975_low_38
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35043242 - 35042994
Alignment:
| Q |
1 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043242 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacaggagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
35043143 |
T |
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| Q |
101 |
aaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattac |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35043142 |
aaacattaaacagaattcagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatccgaaacctcttcattac |
35043043 |
T |
|
| Q |
201 |
tttgataattttgtgatatgtacattccaaggttgatgtccatctcatt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35043042 |
tttgataattttgtgatatgtacattccaaggttgatagccatctcatt |
35042994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 51855239 - 51855487
Alignment:
| Q |
1 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855239 |
atacttatccaaaattgttcttgagctgcaagttaagataaaaacaaaagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
51855338 |
T |
|
| Q |
101 |
aaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattac |
200 |
Q |
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| T |
51855339 |
aaacattaaacagaattaagtttgtccaataacttgctagatctgatctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattac |
51855438 |
T |
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| Q |
201 |
tttgataattttgtgatatgtacattccaaggttgatgtccatctcatt |
249 |
Q |
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| T |
51855439 |
tttgataattttgtgatatgtacattccaaggttgatagccatctcatt |
51855487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 8944474 - 8944678
Alignment:
| Q |
1 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8944474 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaggggagcatccattattt |
8944573 |
T |
|
| Q |
101 |
aaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944574 |
aaacattaaacagaattaagtttgtccaataacttgctacatctggtctctgccagccacttcccaatcaagcgatatacatctgaaacctcttcattac |
8944673 |
T |
|
| Q |
201 |
tttga |
205 |
Q |
| |
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||||| |
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| T |
8944674 |
tttga |
8944678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 1869515 - 1869574
Alignment:
| Q |
180 |
catctgaaacctcttcattactttgata--attttgtgatatgtacattccaaggttgat |
237 |
Q |
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|||||||| |||||||||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
1869515 |
catctgaagtctcttcattactttgataatatttggtgatatgtacatcctaaggttgat |
1869574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 26887185 - 26887003
Alignment:
| Q |
1 |
atacttctccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887185 |
atacttttccaaaattgttcttgagctgcaagttaagataaaaacattagaagacatgaactcaaatgagtcaggcatcacaagggagcatccattattt |
26887086 |
T |
|
| Q |
101 |
aaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccagccacttcccaatcaagcgatatacatc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26887085 |
aaacattaaacagaattaagtttgtccaataacttgctagatctggtctctgccggccacttcccaatcaagcgatatacatc |
26887003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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