View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6975_low_39 (Length: 250)
Name: NF6975_low_39
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36724367 - 36724252
Alignment:
| Q |
1 |
ccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattata |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
36724367 |
ccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagatgcattata |
36724268 |
T |
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| Q |
101 |
gatgcttgtagacagt |
116 |
Q |
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| T |
36724267 |
gatgcttgtagacagt |
36724252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
103 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
203 |
cacataatactaactcccacacctatgatgat |
234 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 712157 - 712314
Alignment:
| Q |
1 |
ccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattata |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| | ||| | |||||||||| |||||||| | || |||||| | |||||||| |||| |||||| |
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| T |
712157 |
ccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattata |
712256 |
T |
|
| Q |
101 |
gatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
158 |
Q |
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||| |||||| |||| ||||| | ||||||| |||||||||| |||||||||||| |
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| T |
712257 |
cttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 717367 - 717603
Alignment:
| Q |
1 |
ccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattata |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |||| |||||| |
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| T |
717367 |
ccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattata |
717466 |
T |
|
| Q |
101 |
gatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatag |
199 |
Q |
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| T |
717467 |
gttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatag |
717566 |
T |
|
| Q |
200 |
tcccacataatactaactcccacacctatgatgatgt |
236 |
Q |
| |
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|||||||||| ||| || | ||| ||||||||||| |
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|
| T |
717567 |
ccccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14541091 - 14541248
Alignment:
| Q |
1 |
ccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattata |
100 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| || |||||||| || |||||||||| |||||| |
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| T |
14541091 |
ccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaatttagatgtattata |
14541190 |
T |
|
| Q |
101 |
gatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
158 |
Q |
| |
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|||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
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|
| T |
14541191 |
gatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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