View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6975_low_41 (Length: 248)
Name: NF6975_low_41
Description: NF6975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6975_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 46809615 - 46809383
Alignment:
| Q |
1 |
cttcctatagatttttcatagaattatacaatgacagcacatatattaagttaataacacagtgataataaaggttaaataaaaccatttttcctttata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46809615 |
cttcctatagatttttcatagaattatacaatgacagcacgtatattaagttaataacacagtgataataaaggttaaataaaaccatttttcctttata |
46809516 |
T |
|
| Q |
101 |
ttttcaattctaacattcatgtctaatgcagctatcatgaatattggttatgttggtataaaagatttctttgatacacatttgggagcacacactctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46809515 |
ttttcaattctaacattcatgtctaatgcagctatcatgaatattggttatgttggtataaaagatttctttgatacacatttgggagcacacactttcc |
46809416 |
T |
|
| Q |
201 |
gagtgtccgcattgtggcgcatactagtgtgat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46809415 |
gagtgtccgcattgtggcgcatactagtgtgat |
46809383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University